RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SLC38A2Q96QD8 506 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 RERGLQ9H628 205 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 C6orf106Q9H6K1 298 aaPredicted RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 TIGARQ9NQ88 270 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 GIMAP4Q9NUV9 329 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 CALML5Q9NZT1 146 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 SLC13A4Q9UKG4 626 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 EXOSC1Q9Y3B2 195 aaKnown RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 TRANK1O15050 2925 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 EIF2S1P05198 315 aaKnown RBP21.33■■□□□ 1.01
VPS53-211ENST00000571805 GSTT2P0CG29 244 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 GSTT2BP0CG30 244 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 CMPK1P30085 196 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 CD79BP40259 229 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 NR4A2P43354 598 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 SOX9P48436 509 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 SLC9A3P48764 834 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 ERVK-21P61565 698 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 HOXC5Q00444 222 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 QSOX2Q6ZRP7 698 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 NKAIN4Q8IVV8 208 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 GJD3Q8N144 294 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 C1GALT1C1Q96EU7 318 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 ARHGAP9Q9BRR9 750 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 ACTRT3Q9BYD9 372 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 NTNG1Q9Y2I2 539 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 RBMX2Q9Y388 322 aaKnown RBP21.33■■□□□ 1.01
VPS53-211ENST00000571805 GRIP1Q9Y3R0 1128 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 ZNF780BQ9Y6R6 833 aa21.33■■□□□ 1.01
VPS53-211ENST00000571805 A0A1W2PQL4 384 aaPredicted RBP21.33■■□□□ 1
VPS53-211ENST00000571805 A0A1W2PQU0 124 aa21.33■■□□□ 1
VPS53-211ENST00000571805 CCNKO75909 580 aa21.33■■□□□ 1
VPS53-211ENST00000571805 THY1P04216 161 aa21.33■■□□□ 1
VPS53-211ENST00000571805 PRKAR1BP31321 381 aa21.33■■□□□ 1
VPS53-211ENST00000571805 CLEC12AQ5QGZ9 265 aa21.33■■□□□ 1
VPS53-211ENST00000571805 TMEM53Q6P2H8 277 aa21.33■■□□□ 1
VPS53-211ENST00000571805 SHFQ7M4L6 423 aa21.33■■□□□ 1
VPS53-211ENST00000571805 C11orf74Q86VG3 221 aa21.33■■□□□ 1
VPS53-211ENST00000571805 OR4Q3Q8NH05 313 aa21.33■■□□□ 1
VPS53-211ENST00000571805 TM9SF2Q99805 663 aa21.33■■□□□ 1
VPS53-211ENST00000571805 SLC17A9Q9BYT1 436 aa21.33■■□□□ 1
VPS53-211ENST00000571805 SNX7Q9UNH6 387 aa21.33■■□□□ 1
VPS53-211ENST00000571805 A0A1W2PQ09 198 aa21.32■■□□□ 1
VPS53-211ENST00000571805 CCNYL3P0C7X3 344 aa21.32■■□□□ 1
VPS53-211ENST00000571805 AVPR1BP47901 424 aa21.32■■□□□ 1
VPS53-211ENST00000571805 PDX1P52945 283 aa21.32■■□□□ 1
VPS53-211ENST00000571805 STXBP1P61764 594 aaKnown RBP21.32■■□□□ 1
VPS53-211ENST00000571805 SNRPNP63162 240 aaKnown RBP21.32■■□□□ 1
VPS53-211ENST00000571805 BTN3A2P78410 334 aa21.32■■□□□ 1
VPS53-211ENST00000571805 ARMC4Q5T2S8 1044 aa21.32■■□□□ 1
VPS53-211ENST00000571805 HEPHL1Q6MZM0 1159 aa21.32■■□□□ 1
VPS53-211ENST00000571805 HSDL2Q6YN16 418 aa21.32■■□□□ 1
VPS53-211ENST00000571805 NRROSQ86YC3 692 aa21.32■■□□□ 1
VPS53-211ENST00000571805 KCT2Q8NC54 265 aa21.32■■□□□ 1
VPS53-211ENST00000571805 OR52P1PQ8NH57 321 aa21.32■■□□□ 1
VPS53-211ENST00000571805 PIGXQ8TBF5 258 aa21.32■■□□□ 1
VPS53-211ENST00000571805 ARMC5Q96C12 935 aa21.32■■□□□ 1
VPS53-211ENST00000571805 C10orf90Q96M02 699 aa21.32■■□□□ 1
VPS53-211ENST00000571805 KATNB1Q9BVA0 655 aa21.32■■□□□ 1
VPS53-211ENST00000571805 SFXN1Q9H9B4 322 aa21.32■■□□□ 1
VPS53-211ENST00000571805 AP3D1O14617 1153 aa21.32■■□□□ 1
VPS53-211ENST00000571805 APODP05090 189 aa21.32■■□□□ 1
VPS53-211ENST00000571805 FABP5Q01469 135 aa21.32■■□□□ 1
VPS53-211ENST00000571805 GPM6BQ13491 265 aa21.32■■□□□ 1
VPS53-211ENST00000571805 DECR1Q16698 335 aa21.32■■□□□ 1
VPS53-211ENST00000571805 CRTC2Q53ET0 693 aaPredicted RBP21.32■■□□□ 1
VPS53-211ENST00000571805 AADACL4Q5VUY2 407 aa21.32■■□□□ 1
VPS53-211ENST00000571805 CD200R1LQ6Q8B3 271 aa21.32■■□□□ 1
VPS53-211ENST00000571805 C16orf62Q7Z3J2 963 aa21.32■■□□□ 1
VPS53-211ENST00000571805 VN1R4Q7Z5H5 301 aa21.32■■□□□ 1
VPS53-211ENST00000571805 SYT14Q8NB59 555 aa21.32■■□□□ 1
VPS53-211ENST00000571805 UFD1Q92890 307 aa21.32■■□□□ 1
VPS53-211ENST00000571805 APOOQ9BUR5 198 aa21.32■■□□□ 1
VPS53-211ENST00000571805 KIR3DX1Q9H7L2 352 aa21.32■■□□□ 1
VPS53-211ENST00000571805 LYARQ9NX58 379 aaKnown RBP21.32■■□□□ 1
VPS53-211ENST00000571805 SCN3AQ9NY46 2000 aa21.32■■□□□ 1
VPS53-211ENST00000571805 SLC30A4O14863 429 aa21.31■■□□□ 1
VPS53-211ENST00000571805 KLF4O43474 513 aa21.31■■□□□ 1
VPS53-211ENST00000571805 GNSP15586 552 aa21.31■■□□□ 1
VPS53-211ENST00000571805 FPR3P25089 353 aa21.31■■□□□ 1
VPS53-211ENST00000571805 TJAP1Q5JTD0 557 aa21.31■■□□□ 1
VPS53-211ENST00000571805 C6orf132Q5T0Z8 1188 aa21.31■■□□□ 1
VPS53-211ENST00000571805 ZNF544Q6NX49 715 aa21.31■■□□□ 1
VPS53-211ENST00000571805 XKRXQ6PP77 449 aa21.31■■□□□ 1
VPS53-211ENST00000571805 FAM131AQ6UXB0 335 aa21.31■■□□□ 1
VPS53-211ENST00000571805 RRM2BQ7LG56 351 aa21.31■■□□□ 1
VPS53-211ENST00000571805 DGLUCYQ7Z3D6 616 aa21.31■■□□□ 1
VPS53-211ENST00000571805 PAQR7Q86WK9 346 aa21.31■■□□□ 1
VPS53-211ENST00000571805 POGLUT1Q8NBL1 392 aa21.31■■□□□ 1
VPS53-211ENST00000571805 OR6F1Q8NGZ6 308 aa21.31■■□□□ 1
VPS53-211ENST00000571805 ACOT11Q8WXI4 607 aaPredicted RBP21.31■■□□□ 1
VPS53-211ENST00000571805 MOV10Q9HCE1 1003 aaKnown RBP21.31■■□□□ 1
VPS53-211ENST00000571805 IL20Q9NYY1 176 aa21.31■■□□□ 1
VPS53-211ENST00000571805 ISM1B1AKI9 464 aa21.31■■□□□ 1
VPS53-211ENST00000571805 SURF4O15260 269 aa21.31■■□□□ 1
VPS53-211ENST00000571805 FGF9P31371 208 aaPredicted RBP21.31■■□□□ 1
VPS53-211ENST00000571805 GABRA5P31644 462 aa21.31■■□□□ 1
VPS53-211ENST00000571805 STAT5AP42229 794 aa21.31■■□□□ 1
VPS53-211ENST00000571805 SLC30A6Q6NXT4 461 aa21.31■■□□□ 1
VPS53-211ENST00000571805 FAM111BQ6SJ93 734 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms