RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ALDOCP09972 364 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 EFNA1P20827 205 aaPredicted RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 GDF1P27539 372 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 PRKAG1P54619 331 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 STX1BP61266 288 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 LRRC74AQ0VAA2 488 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 TP53BP2Q13625 1128 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 GSTA3Q16772 222 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 C4orf17Q53FE4 359 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 ARHGAP11AQ6P4F7 1023 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 GLB1L3Q8NCI6 653 aaPredicted RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 PSMA8Q8TAA3 256 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 GPR151Q8TDV0 419 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 FAM120BQ96EK7 910 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 CHMP6Q96FZ7 201 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 TMEM41AQ96HV5 264 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 ADOQ96SZ5 270 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 ANGPTL4Q9BY76 406 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 ZDHHC11Q9H8X9 412 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 FAM120CQ9NX05 1096 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 SUCOQ9UBS9 1254 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 FAF1Q9UNN5 650 aaPredicted RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 ABCG2Q9UNQ0 655 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 CACNA1CQ13936 2221 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 KIAA1549Q9HCM3 1950 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 USP9XQ93008 2570 aaPredicted RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 PCNX1Q96RV3 2341 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CLEC18AA5D8T8 446 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 PRRG2O14669 202 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 UBDO15205 165 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 ATP8B1O43520 1251 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 TSPAN2O60636 221 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 STSP08842 583 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 ALOX5P09917 674 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 S100A3P33764 101 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CASP3P42574 277 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 MAGEA5P43359 124 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CCT3P49368 545 aaKnown RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 CLK3P49761 638 aaKnown RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 UBAP2LQ14157 1087 aaKnown RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 FAM174BQ3ZCQ3 159 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 SLC9B1Q4ZJI4 515 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 PDCD4Q53EL6 469 aaKnown RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 CMPK2Q5EBM0 449 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 RNFT1Q5M7Z0 435 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 OR4F3Q6IEY1 312 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 MFSD12Q6NUT3 480 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 MTFR2Q6P444 385 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CLEC18BQ6UXF7 455 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 TMEM251Q8N6I4 163 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 COX18Q8N8Q8 333 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CLEC18CQ8NCF0 446 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 OR4A15Q8NGL6 344 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 CKAP2Q8WWK9 683 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 SLC9A6Q92581 669 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 HGDQ93099 445 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 EFHD2Q96C19 240 aaPredicted RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 STACQ99469 402 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 SIKE1Q9BRV8 207 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 EXO5Q9H790 373 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 HHATLQ9HCP6 504 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 SLCO1B3Q9NPD5 702 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 TCF7L2Q9NQB0 619 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 SIRT3Q9NTG7 399 aaPredicted RBP11.91□□□□□ -0.5
CLK3-224ENST00000568605 ZNF446Q9NWS9 450 aa11.91□□□□□ -0.5
CLK3-224ENST00000568605 TRGV8A0A0C4DH27 118 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 PRSS51A0A1B0GVH4 220 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 ANKRD28O15084 1053 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 TRIM3O75382 744 aaPredicted RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 NME6O75414 186 aaPredicted RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 NKX2-2O95096 273 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 IL33O95760 270 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 HMGN2P05204 90 aaKnown RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 GABRA3P34903 492 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 EVI2BP34910 448 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 PTGS2P35354 604 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 GCKP35557 465 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 CA7P43166 264 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 RFX3P48380 749 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 HBA1P69905 142 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 IRX1P78414 480 aaPredicted RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 FOXO1Q12778 655 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 SPTAN1Q13813 2472 aaKnown RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 LASP1Q14847 261 aaKnown RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 SPANXN4Q5MJ08 99 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 EPGNQ6UW88 154 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 ANGPTL8Q6UXH0 198 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 TRIML2Q8N7C3 387 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 OR52N2Q8NGI0 321 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 OR1J4Q8NGS1 313 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 SSC4DQ8WTU2 575 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 HOXB13Q92826 284 aaPredicted RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 RMND5BQ96G75 393 aaPredicted RBP11.9□□□□□ -0.5
CLK3-224ENST00000568605 NODALQ96S42 347 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 ACTRT3Q9BYD9 372 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 LDAHQ9H6V9 325 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 SDHAF3Q9NRP4 125 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 DUSP22Q9NRW4 184 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 PLSCR2Q9NRY7 297 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 GIN1Q9NXP7 522 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms