RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 A0A1W2PQ67 120 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 NPIPA2E9PIF3 369 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 CACNB4O00305 520 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 ABCD4O14678 606 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ZNF263O14978 683 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 FMO6PO60774 539 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 FOXH1O75593 365 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 LYPLA1O75608 230 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 HOXB7P09629 217 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 HIST1H2AGP0C0S8 130 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 TOP1P11387 765 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 NOP14P78316 857 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 IL18R1Q13478 541 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ELAVL3Q14576 367 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 HERPUD1Q15011 391 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 CLPPQ16740 277 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 GPAT3Q53EU6 434 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 GLRA4Q5JXX5 417 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 PRAMEF7Q5VXH5 474 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 PRR5LQ6MZQ0 368 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ATRAIDQ6UW56 229 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 BNIPLQ7Z465 357 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 HSD17B13Q7Z5P4 300 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 RANBP3LQ86VV4 465 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 HIST2H2ABQ8IUE6 130 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 FNDC8Q8TC99 324 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 SRSF12Q8WXF0 261 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 HIST1H2ACQ93077 130 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 LHX4Q969G2 390 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 MCHR2Q969V1 340 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ACCSQ96QU6 501 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 MRPL9Q9BYD2 267 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 NLNQ9BYT8 704 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 SLC5A7Q9GZV3 580 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ABCG8Q9H221 673 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 ZNF331Q9NQX6 463 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 LHX3Q9UBR4 397 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 FBXW2Q9UKT8 454 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 BARX2Q9UMQ3 279 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 STX8Q9UNK0 236 aa1.77□□□□□ -2.13
VPS35-207ENST00000568191 FOXA2Q9Y261 457 aaPredicted RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 MRPS2Q9Y399 296 aaKnown RBP1.77□□□□□ -2.13
VPS35-207ENST00000568191 NACAE9PAV3 2078 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 GRIN2DO15399 1336 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 A0A1W2PRV1 198 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 DHRS7CA6NNS2 312 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 PDLIM1O00151 329 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 TLR4O00206 839 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 SLC28A1O00337 649 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 LRP3O75074 770 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 WISP3O95389 354 aaPredicted RBP1.76□□□□□ -2.13
VPS35-207ENST00000568191 ANP32DO95626 131 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 CXCL14O95715 111 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 ECDO95905 644 aaPredicted RBP1.76□□□□□ -2.13
VPS35-207ENST00000568191 SDC1P18827 310 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 PTBP1P26599 531 aaKnown RBP eCLIP1.76□□□□□ -2.13
VPS35-207ENST00000568191 HTR1FP30939 366 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 CAV2P51636 162 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 PFN3P60673 137 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 OC90Q02509 493 aaPredicted RBP1.76□□□□□ -2.13
VPS35-207ENST00000568191 NPRL3Q12980 569 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 HFEQ30201 348 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 TOR1AIP1Q5JTV8 583 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 C1QTNF12Q5T7M4 302 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 OR5M10Q6IEU7 315 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 SLC22A16Q86VW1 577 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 C9orf40Q8IXQ3 194 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 ZNF786Q8N393 782 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 DCAF4L2Q8NA75 395 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 LPCAT1Q8NF37 534 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 FGGYQ96C11 551 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 RAB39BQ96DA2 213 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 SLC35E1Q96K37 410 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 GPR137Q96N19 417 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 DEFB118Q96PH6 123 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 TSPAN18Q96SJ8 248 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 SCRT1Q9BWW7 348 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 CARD9Q9H257 536 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 AKIRIN1Q9H9L7 192 aaPredicted RBP1.76□□□□□ -2.13
VPS35-207ENST00000568191 ELOVL2Q9NXB9 296 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 NARFQ9UHQ1 456 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 ENTPD4Q9Y227 616 aa1.76□□□□□ -2.13
VPS35-207ENST00000568191 USP6P35125 1406 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 MACROD2A1Z1Q3 448 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 ERVV-1B6SEH8 477 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 H3BMH7 237 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 ARPC1BO15143 372 aaKnown RBP1.75□□□□□ -2.13
VPS35-207ENST00000568191 SDC3O75056 442 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 ICOSLGO75144 302 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 CCNE1P24864 410 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 HERVK_113P61574 105 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 GALK2Q01415 458 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 UBXN1Q04323 297 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 TLE4Q04727 773 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 LASP1Q14847 261 aaKnown RBP1.75□□□□□ -2.13
VPS35-207ENST00000568191 OR2B11Q5JQS5 317 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 CYB5R2Q6BCY4 276 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 PNCKQ6P2M8 343 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 FRA10AC1Q70Z53 315 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms