RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MZB1Q8WU39 189 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 WNT2BQ93097 391 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 TRIM44Q96DX7 344 aaPredicted RBP14.59□□□□□ -0.07
CLN3-229ENST00000567963 ZFP3Q96NJ6 502 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 SHCBP1LQ9BZQ2 653 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 STMN4Q9H169 189 aaPredicted RBP14.59□□□□□ -0.07
CLN3-229ENST00000567963 MID1IP1Q9NPA3 183 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 SENP1Q9P0U3 644 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 PSMC3IPQ9P2W1 217 aaPredicted RBP14.59□□□□□ -0.07
CLN3-229ENST00000567963 NF1P21359 2839 aa14.58□□□□□ -0.07
CLN3-229ENST00000567963 CLCA1A8K7I4 914 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 MYO1GB0I1T2 1018 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 B4DXG7 233 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 ZIC3O60481 467 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 FAM153BP0C7A2 387 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 DDCP20711 480 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 DNASE1P24855 282 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 FOXA1P55317 472 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 PSG6Q00889 435 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 ZNF763Q0D2J5 394 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 C2orf80Q0P641 193 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 PRSS53Q2L4Q9 553 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 FAM153CQ494X1 144 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 SPDYAQ5MJ70 313 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 PLXDC2Q6UX71 529 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 SLC44A2Q8IWA5 706 aaPredicted RBP14.58□□□□□ -0.08
CLN3-229ENST00000567963 CNPY4Q8N129 248 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 CHDHQ8NE62 594 aaPredicted RBP14.58□□□□□ -0.08
CLN3-229ENST00000567963 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.58□□□□□ -0.08
CLN3-229ENST00000567963 EFHD2Q96C19 240 aaPredicted RBP14.58□□□□□ -0.08
CLN3-229ENST00000567963 INTS12Q96CB8 462 aaKnown RBP14.58□□□□□ -0.08
CLN3-229ENST00000567963 DTNBP1Q96EV8 351 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 BBS4Q96RK4 519 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 SFXN3Q9BWM7 321 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 TXLNGYQ9BZA5 131 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 CLCF1Q9UBD9 225 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 TBK1Q9UHD2 729 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 PLEKHA6Q9Y2H5 1048 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 MED12LQ86YW9 2145 aa14.58□□□□□ -0.08
CLN3-229ENST00000567963 MTORP42345 2549 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 G3V2L1 256 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 PLOD2O00469 737 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 ZNF708P17019 499 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 CHMP24386 653 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 GRK2P25098 689 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 CLDN18P56856 261 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 TGIF2LYQ8IUE0 185 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 CCNYL1Q8N7R7 359 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 CEP112Q8N8E3 955 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 CCDC126Q96EE4 140 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 SFXN2Q96NB2 322 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 RBM24Q9BX46 236 aaKnown RBP14.57□□□□□ -0.08
CLN3-229ENST00000567963 TAS2R7Q9NYW3 318 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 DKKL1Q9UK85 242 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 EMCNQ9ULC0 261 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 OR10H1Q9Y4A9 318 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 A0A087WV62 115 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 A0A1W2PPM1 405 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 JUNP05412 331 aaKnown RBP14.57□□□□□ -0.08
CLN3-229ENST00000567963 DPP4P27487 766 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 NCBP2P52298 156 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLN3-229ENST00000567963 MRPS22P82650 360 aaKnown RBP14.57□□□□□ -0.08
CLN3-229ENST00000567963 GAB1Q13480 694 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 FBXW10Q5XX13 1052 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 FAM71E1Q6IPT2 247 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 TRIM46Q7Z4K8 759 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 LUZP2Q86TE4 346 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 ALPK1Q96QP1 1244 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 ACBD3Q9H3P7 528 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 GRID1Q9ULK0 1009 aa14.57□□□□□ -0.08
CLN3-229ENST00000567963 C19orf53Q9UNZ5 99 aaPredicted RBP14.57□□□□□ -0.08
CLN3-229ENST00000567963 RPH3AQ9Y2J0 694 aaPredicted RBP14.57□□□□□ -0.08
CLN3-229ENST00000567963 C17orf51A8MQB3 221 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 KIF2AO00139 706 aaPredicted RBP14.56□□□□□ -0.08
CLN3-229ENST00000567963 COQ9O75208 318 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 SLITRK5O94991 958 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 GOSR1O95249 250 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 MYL2P10916 166 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 EVI2BP34910 448 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 MC3RP41968 323 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 DSCR4P56555 118 aaPredicted RBP14.56□□□□□ -0.08
CLN3-229ENST00000567963 NAA20P61599 178 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 BCL2A1Q16548 175 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 IMPG1Q17R60 797 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 CYP27C1Q4G0S4 372 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 ZYG11AQ6WRX3 759 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 SH2D5Q6ZV89 423 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 CAMKMTQ7Z624 323 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 GCNT2Q8N0V5 402 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 CDC26Q8NHZ8 85 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 KIF18AQ8NI77 898 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 FAM76AQ8TAV0 307 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 MBD6Q96DN6 1003 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 PIGMQ9H3S5 423 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 GLIPR2Q9H4G4 154 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 PLEKHF2Q9H8W4 249 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 MIEF1Q9NQG6 463 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 GALNT8Q9NY28 637 aa14.56□□□□□ -0.08
CLN3-229ENST00000567963 WBP11Q9Y2W2 641 aaKnown RBP14.56□□□□□ -0.08
CLN3-229ENST00000567963 A8MXE2 369 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms