RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 PAPD4Q6PIY7 484 aaKnown RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 NPSR1Q6W5P4 371 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 TMEM64Q6YI46 380 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 RNF111Q6ZNA4 994 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 C6orf120Q7Z4R8 191 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 PPP1R32Q7Z5V6 425 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 IFNEQ86WN2 208 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 SLC44A2Q8IWA5 706 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 C9orf40Q8IXQ3 194 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 SLC15A3Q8IY34 581 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ULK2Q8IYT8 1036 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 PRR22Q8IZ63 422 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ST13P4Q8IZP2 240 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 PGAM4Q8N0Y7 254 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 DPP10Q8N608 796 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 NUP43Q8NFH3 380 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 OR4N2Q8NGD1 307 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 OR10Q1Q8NGQ4 319 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 OR2Y1Q8NGV0 311 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 GOT1L1Q8NHS2 421 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 ZFP28Q8NHY6 868 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 SLC2A12Q8TD20 617 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ADAMTS18Q8TE60 1221 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 THAP3Q8WTV1 239 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 STARD8Q92502 1023 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 JADE3Q92613 823 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 RAB8BQ92930 207 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 NKD1Q969G9 470 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 NCLNQ969V3 563 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 FKBP10Q96AY3 582 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ELP4Q96EB1 424 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ZNF764Q96H86 408 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 ANKRD27Q96NW4 1050 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 CDRT15Q96T59 188 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 PRPF18Q99633 342 aaKnown RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 ZPBPQ9BS86 351 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 BTBD10Q9BSF8 475 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 THTPAQ9BU02 230 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 THUMPD3Q9BV44 507 aaKnown RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 NUDT9Q9BW91 350 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ITPAQ9BY32 194 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ASPSCR1Q9BZE9 553 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 TGIF2Q9GZN2 237 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 RNF32Q9H0A6 362 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 PCDHAC1Q9H158 963 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 SLC26A1Q9H2B4 701 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 LRMDAQ9H2I8 198 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 OR51I1Q9H343 314 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 RMND5AQ9H871 391 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 EFCAB1Q9HAE3 211 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 CXorf21Q9HAI6 301 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 TPT1P8Q9HAU6 139 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ACSS1Q9NUB1 689 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 GIMAP4Q9NUV9 329 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 DDX18Q9NVP1 670 aaKnown RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 TAS2R9Q9NYW1 312 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 TAS2R7Q9NYW3 318 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 BCAP29Q9UHQ4 241 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 GPR160Q9UJ42 338 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 ZNF223Q9UK11 482 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 TCFL5Q9UL49 500 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 PADI1Q9ULC6 663 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 MRPS33Q9Y291 106 aaKnown RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 MMACHCQ9Y4U1 282 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 HS3ST3B1Q9Y662 390 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 V9GYQ6 96 aa4.84□□□□□ -1.63
SPG11-220ENST00000559933 KMT2BQ9UMN6 2715 aaPredicted RBP4.84□□□□□ -1.63
SPG11-220ENST00000559933 LOC400499M0QZD8 3231 aa4.84□□□□□ -1.64
SPG11-220ENST00000559933 IGF2RP11717 2491 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 KNTC1P50748 2209 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 IGHV1-45A0A0A0MS14 117 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TRBV11-1A0A0K0K1C0 115 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MED19A0JLT2 244 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 SAGE2PA6NJ88 616 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 CLIC1O00299 241 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 NKX2-8O15522 239 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 EMC8O43402 210 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF354AO60765 605 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 DNAJC8O75937 253 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 ATE1O95260 518 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PSMG1O95456 288 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ONECUT2O95948 504 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 IGKV1D-16P01601 117 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 OPN1SWP03999 348 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 HMGN2P05204 90 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 BCHEP06276 602 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 OR12D1P0DN82 309 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 COX6A1P12074 109 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ATP6V1B2P21281 511 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PTPN4P29074 926 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 AQP1P29972 269 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MPIP34949 423 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PGM1P36871 562 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 RFX3P48380 749 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TRPC1P48995 793 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MAN2A2P49641 1150 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GSK3BP49841 420 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 EMDP50402 254 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GZMMP51124 257 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SLC26A5P58743 744 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms