RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 WIF1Q9Y5W5 379 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 CCDC168Q8NDH2 2452 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 AKAP10O43572 662 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 ZIC3O60481 467 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 IGKV1D-16P01601 117 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 SDC1P18827 310 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 GRK2P25098 689 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 UQCRC1P31930 480 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 MPIP34949 423 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 GFRA1P56159 465 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 SNTA1Q13424 505 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 GAB1Q13480 694 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 SLC25A35Q3KQZ1 300 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 RFTN2Q52LD8 501 aaPredicted RBP16.1■□□□□ 0.17
HDDC3-205ENST00000559898 CES4AQ5XG92 561 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 ARSKQ6UWY0 536 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 ZCCHC23Q6ZST2 131 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 TRABD2AQ86V40 505 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 PLCZ1Q86YW0 608 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 LACC1Q8IV20 430 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 BANPQ8N9N5 519 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 OR5M1Q8NGP8 315 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 ELP4Q96EB1 424 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 TSSK3Q96PN8 268 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 FAM111AQ96PZ2 611 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 GIMAP4Q9NUV9 329 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 TAS2R7Q9NYW3 318 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 CRIM1Q9NZV1 1036 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 SENP1Q9P0U3 644 aa16.1■□□□□ 0.17
HDDC3-205ENST00000559898 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.1■□□□□ 0.17
HDDC3-205ENST00000559898 C19orf53Q9UNZ5 99 aaPredicted RBP16.1■□□□□ 0.17
HDDC3-205ENST00000559898 V9GYY5 206 aaPredicted RBP16.1■□□□□ 0.17
HDDC3-205ENST00000559898 HIVEP1P15822 2718 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 CCDC151A5D8V7 595 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MBD3L4A6NDZ8 208 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MBD3L3A6NE82 208 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MBD3L5A6NJ08 208 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 HSPB2A8KAH6 182 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 H0YC42 278 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 AZIN1O14977 448 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 CDH16O75309 829 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 CBR3O75828 277 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 BCAS2O75934 225 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 IL12BP29460 328 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 TIMP3P35625 211 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 LHX2P50458 406 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 TPD52P55327 224 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 B3GALT5-AS1P59052 145 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 HSPB2Q16082 182 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 UGT3A2Q3SY77 523 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 KANK2Q63ZY3 851 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 TMEM200AQ86VY9 491 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 OR2L13Q8N349 312 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MBD3L2Q8NHZ7 208 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 FBXO30Q8TB52 745 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 PIK3R3Q92569 461 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 TMCO6Q96DC7 493 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 ERP27Q96DN0 273 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 OTUB1Q96FW1 271 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 FCRL1Q96LA6 429 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 KLHDC3Q9BQ90 382 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 DSN1Q9H410 356 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 LRTM1Q9HBL6 345 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MIEF1Q9NQG6 463 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 RRAGDQ9NQL2 400 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MED11Q9P086 117 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 KCNN3Q9UGI6 736 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 DNAJC15Q9Y5T4 150 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 MPDZO75970 2070 aa16.09■□□□□ 0.17
HDDC3-205ENST00000559898 A0A087WV62 115 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 NPIPB8E9PQR5 432 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 SYT5O00445 386 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 FADS1O60427 444 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 PRPH2P23942 346 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 RFX3P48380 749 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 PNLIPRP2P54317 469 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 CLDN15P56746 228 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 CLDN18P56856 261 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 HSPB3Q12988 150 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 STX5Q13190 355 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 APOOLQ6UXV4 268 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 ADGRE4PQ86SQ3 457 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 EXOC3L1Q86VI1 746 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 PM20D2Q8IYS1 436 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 CLYBLQ8N0X4 340 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 AGR3Q8TD06 166 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 APOPT1Q96IL0 206 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 GPATCH1Q9BRR8 931 aaKnown RBP16.08■□□□□ 0.16
HDDC3-205ENST00000559898 EQTNQ9NQ60 294 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 C1orf109Q9NX04 203 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 TAS2R10Q9NYW0 307 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 TAS2R9Q9NYW1 312 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 OR10H1Q9Y4A9 318 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 F8P00451 2351 aa16.08■□□□□ 0.16
HDDC3-205ENST00000559898 CD8B2A6NJW9 211 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 CLCA1A8K7I4 914 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 SHISA8B8ZZ34 492 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 PLOD2O00469 737 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 LSM1O15116 133 aaKnown RBP16.07■□□□□ 0.16
HDDC3-205ENST00000559898 GMFGO60234 142 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms