RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C16orf62Q7Z3J2 963 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 RNF130Q86XS8 419 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 PRR22Q8IZ63 422 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 FBXW8Q8N3Y1 598 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 AMER2Q8N7J2 671 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 MDS2Q8NDY4 140 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 MIPOL1Q8TD10 442 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 BCAS4Q8TDM0 211 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 ZFP90Q8TF47 636 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 SLC39A7Q92504 469 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 DIO2Q92813 273 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 HOXB13Q92826 284 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 TMBIM1Q969X1 311 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 RMND5BQ96G75 393 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 SLC35A4Q96G79 324 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 COL21A1Q96P44 957 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 BTBD2Q9BX70 525 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 TPT1P8Q9HAU6 139 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 ZBTB20Q9HC78 741 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 SACM1LQ9NTJ5 587 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 CNIH4Q9P003 139 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 C15orf38-AP3S2A0A0A6YYH1 394 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 MRASO14807 208 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 NME2P1O60361 137 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 NEURL1O76050 574 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 IL33O95760 270 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SP1P08047 785 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 COX4I1P13073 169 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 NME2P22392 152 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 PIGAP37287 484 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 MAP3K8P41279 467 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 RFX3P48380 749 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 CD97P48960 835 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 PNLIPRP2P54317 469 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP3-216ENST00000559873 ZNF791Q3KP31 576 aaPredicted RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 PAGE3Q5JUK9 113 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 DCST2Q5T1A1 773 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 ZNF468Q5VIY5 522 aaPredicted RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 SLC22A10Q63ZE4 541 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SLC6A19Q695T7 634 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 REP15Q6BDI9 236 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SPINK14Q6IE38 97 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 RPUSD3Q6P087 351 aaKnown RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 PCSK4Q6UW60 755 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 WDR53Q7Z5U6 358 aaPredicted RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 ARPINQ7Z6K5 226 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 RBMXL3Q8N7X1 1067 aaKnown RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 BCORP1Q8N888 145 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 POGLUT1Q8NBL1 392 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SLC16A11Q8NCK7 471 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 OR52N2Q8NGI0 321 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 PAQR8Q8TEZ7 354 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 CDS1Q92903 461 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 EFHD2Q96C19 240 aaPredicted RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 ROPN1LQ96C74 230 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SCMH1Q96GD3 660 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 C16orf58Q96GQ5 468 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 OR7D2Q96RA2 312 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 SH3GL1Q99961 368 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 YIPF4Q9BSR8 244 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 CCDC106Q9BWC9 280 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 MFRPQ9BY79 579 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 TRIM4Q9C037 500 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 PAIP1Q9H074 479 aaKnown RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 MYLK2Q9H1R3 596 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 OR51I1Q9H343 314 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 METTL7AQ9H8H3 244 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 CACYBPQ9HB71 228 aaKnown RBP9.28□□□□□ -0.92
USP3-216ENST00000559873 GID8Q9NWU2 228 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 KLRF1Q9NZS2 232 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 ABCG2Q9UNQ0 655 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 LIPT1Q9Y234 373 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 PCDHB14Q9Y5E9 798 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 IGSF10Q6WRI0 2623 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 COL6A6A6NMZ7 2263 aa9.28□□□□□ -0.92
USP3-216ENST00000559873 LOC100653049A0A140TA62 436 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 ASPDHA6ND91 283 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 PRAMEF25A6NGN4 478 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 K7EM74 188 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 ACOT7O00154 380 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 CLIC1O00299 241 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 TSPAN2O60636 221 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 KRT34O76011 436 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 HPGDP15428 266 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 PTPN6P29350 595 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 CRATP43155 626 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 MNAT1P51948 309 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 FBXW4P57775 412 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 DSTNP60981 165 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 RPS26P62854 115 aaKnown RBP9.27□□□□□ -0.93
USP3-216ENST00000559873 KCNJ2P63252 427 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 NFATC3Q12968 1075 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 SNTA1Q13424 505 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 NADK2Q4G0N4 442 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 EXOSC6Q5RKV6 272 aaKnown RBP9.27□□□□□ -0.93
USP3-216ENST00000559873 FAM91A1Q658Y4 838 aa9.27□□□□□ -0.93
USP3-216ENST00000559873 TNFAIP8L2Q6P589 184 aaPredicted RBP9.27□□□□□ -0.93
USP3-216ENST00000559873 TMEM81Q6P7N7 255 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms