RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CAPRIN1	Q14444	709 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	C10orf62	Q5T681	223 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	FRG2	Q64ET8	278 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	HMBOX1	Q6NT76	420 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	IFT20	Q8IY31	132 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	CENPL	Q8N0S6	344 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	OR4K17	Q8NGC6	315 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	TM4SF18	Q96CE8	201 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	FRG2B	Q96QU4	278 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	RHOXF2	Q9BQY4	288 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	RNF122	Q9H9V4	155 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	PROCR	Q9UNN8	238 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZAN	Q9Y493	2812 aa		11.41	□□□□□ -0.58
SHMT2-223	ENST00000556689	ANK3	Q12955	4377 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	RNF212B	A8MTL3	300 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	KLF4	O43474	513 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	RAD51C	O43502	376 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	C2	P06681	752 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CT45A8	P0DMV1	189 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CT45A9	P0DMV2	189 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	PPP3CB	P16298	524 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	IL12B	P29460	328 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CCNG1	P51959	295 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	SUCLG1	P53597	346 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	PNLIPRP2	P54317	469 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	GAS1	P54826	345 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CLDN15	P56746	228 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	IRF9	Q00978	393 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	DUSP2	Q05923	314 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	IFT88	Q13099	833 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	LTB4R	Q15722	352 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CT45A2	Q5DJT8	189 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	BEX5	Q5H9J7	111 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	HEPHL1	Q6MZM0	1159 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	KLC3	Q6P597	504 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	PODNL1	Q6PEZ8	512 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF704	Q6ZNC4	412 aa	Predicted RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	COMMD6	Q7Z4G1	85 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	MED12L	Q86YW9	2145 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	NOA1	Q8NC60	698 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	KLHL29	Q96CT2	875 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CNRIP1	Q96F85	164 aa	Predicted RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF681	Q96N22	645 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	BTBD9	Q96Q07	612 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	NTMT1	Q9BV86	223 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	FAIM2	Q9BWQ8	316 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	PINK1	Q9BXM7	581 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	DSN1	Q9H410	356 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	CPSF2	Q9P2I0	782 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF337	Q9Y3M9	751 aa		11.4	□□□□□ -0.58
SHMT2-223	ENST00000556689	COL6A5	A8TX70	2615 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689		B4DXG7	233 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689		H0YC42	278 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	LINC01387	J3KSC0	135 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	DSCAM	O60469	2012 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	KLHL2	O95198	593 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	IFNA2	P01563	188 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	THBD	P07204	575 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	NID1	P14543	1247 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	HK1	P19367	917 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ALDH9A1	P49189	494 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	NR1H2	P55055	460 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	TPD52	P55327	224 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	PSPH	P78330	225 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	MRPS22	P82650	360 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	MRPS35	P82673	323 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	GUCY2D	Q02846	1103 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	DMTN	Q08495	405 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	PON3	Q15166	354 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	EXOC3L2	Q2M3D2	409 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	SGO1	Q5FBB7	561 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	MROH9	Q5TGP6	573 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	RAET1L	Q5VY80	246 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	FAM180B	Q6P0A1	224 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	FAM214B	Q7L5A3	538 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	MILR1	Q7Z6M3	343 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	CCDC116	Q8IYX3	515 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ZNF611	Q8N823	705 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR52B6	Q8NGF0	335 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	FNDC9	Q8TBE3	224 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	RNF138	Q8WVD3	245 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ERP27	Q96DN0	273 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ERP44	Q9BS26	406 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	TSPYL1	Q9H0U9	437 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ELOVL6	Q9H5J4	265 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLSCR4	Q9NRQ2	329 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	PPP4R1L	Q9P1A2	415 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	WHRN	Q9P202	907 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	UTS2R	Q9UKP6	389 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	SLC12A4	Q9UP95	1085 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	ZNF175	Q9Y473	711 aa		11.39	□□□□□ -0.59
SHMT2-223	ENST00000556689	RNF223	E7ERA6	249 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	HS3ST1	O14792	307 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	SEC14L5	O43304	696 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	ERLIN1	O75477	346 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	SOX30	O94993	753 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLAU	P00749	431 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms