RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 HMBOX1Q6NT76 420 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TMEM81Q6P7N7 255 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 FAM214BQ7L5A3 538 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CMC1Q7Z7K0 106 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 LUZP2Q86TE4 346 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 LACC1Q8IV20 430 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 PM20D2Q8IYS1 436 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TAGAPQ8N103 731 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 LIX1Q8N485 282 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 L3MBTL4Q8NA19 623 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 WDR20Q8TBZ3 569 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 PIWIL2Q8TC59 973 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 DOK4Q8TEW6 326 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 PPWD1Q96BP3 646 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 REPS1Q96D71 796 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF597Q96LX8 424 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TRIB1Q96RU8 372 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 MTERF1Q99551 399 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TIMP4Q99727 224 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 PIGQQ9BRB3 760 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 DOHHQ9BU89 302 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 BDH2Q9BUT1 245 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SORBS1Q9BX66 1292 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ERVK-6Q9BXR3 956 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CXorf21Q9HAI6 301 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SNX15Q9NRS6 342 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TAGLN3Q9UI15 199 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ERVK-19Q9WJR5 959 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ACOT9Q9Y305 439 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 NINQ8N4C6 2090 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SH3D21A4FU49 640 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 MBD3L4A6NDZ8 208 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 MBD3L5A6NJ08 208 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CD8B2A6NJW9 211 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 SUPT3HB4E1H0 165 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 TP53I11O14683 189 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 OR10H2O60403 315 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CDH16O75309 829 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 SUPT3HO75486 399 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 EEDO75530 441 aaKnown RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 AIFM1O95831 613 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 FAM58BPP0C7Q3 252 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 NAGAP17050 411 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 PIK3CGP48736 1102 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CDK9P50750 372 aaKnown RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 RPS13P62277 151 aaKnown RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 PHEXP78562 749 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 SORDQ00796 357 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 GUCY2DQ02846 1103 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 DUSP8Q13202 625 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF267Q14586 743 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-220ENST00000556486 FAM83EQ2M2I3 478 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 NSUN5P2Q63ZY6 315 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 VASNQ6EMK4 673 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 OR52E8Q6IFG1 317 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 RAPH1Q70E73 1250 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 NUDT13Q86X67 352 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CTAGE3PQ8IX95 158 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CMIPQ8IY22 773 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 RNF175Q8N4F7 328 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 TEX9Q8N6V9 391 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 PPM1NQ8N819 430 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF615Q8N8J6 731 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 SPATA4Q8NEY3 305 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 EXT2Q93063 718 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 ADIPOR1Q96A54 375 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 GPR78Q96P69 363 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 GAL3ST4Q96RP7 486 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CCL19Q99731 98 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 ANGPTL4Q9BY76 406 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 ACTR8Q9H981 624 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 WDR41Q9HAD4 459 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 GALNT8Q9NY28 637 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 JKAMPQ9P055 326 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 CAMK2AQ9UQM7 478 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 SLC6A5Q9Y345 797 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 WIF1Q9Y5W5 379 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 DOCK7Q96N67 2140 aa9.11□□□□□ -0.95
SCFD1-220ENST00000556486 HEATR5AQ86XA9 2040 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 A0A087X1B8 175 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 C2orf92A0A1B0GVN3 265 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 HMX2A2RU54 273 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 MBD3L3A6NE82 208 aaPredicted RBP9.1□□□□□ -0.95
SCFD1-220ENST00000556486 RAD51CO43502 376 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 SH3BGRLO75368 114 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 PRKRAO75569 313 aaKnown RBP9.1□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF205O95201 554 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 CNOT4O95628 575 aaKnown RBP9.1□□□□□ -0.95
SCFD1-220ENST00000556486 IL18BPO95998 194 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 C2P06681 752 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 GDF1P27539 372 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 MAGEA4P43358 317 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 CPA2P48052 419 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 FOXF2Q12947 444 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 DDX39BQ13838 428 aaKnown RBP9.1□□□□□ -0.95
SCFD1-220ENST00000556486 SLMAPQ14BN4 828 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 ACAP2Q15057 778 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 DCST1Q5T197 706 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 C22orf34Q6ZV56 151 aa9.1□□□□□ -0.95
SCFD1-220ENST00000556486 OR7G1Q8NGA0 311 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms