RNA–Protein interactions for RNA: ENST00000554672.5

ATXN3-229, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 759 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-229	ENST00000554672	TCRBV7S2A1N4T	A0A589	114 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	FRG2C	A6NGY1	282 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	MIF4GD	A9UHW6	222 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	C4orf51	C9J302	202 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672		H0Y3Z8	333 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ERI3	O43414	337 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SPRY1	O43609	319 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LIAS	O43766	372 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	FAM20B	O75063	409 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LDB3	O75112	727 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	MFAP3L	O75121	409 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TNFSF13	O75888	250 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	HAUS5	O94927	633 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	JUN	P05412	331 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	POU2F1	P14859	743 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PPP3CB	P16298	524 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TBXA2R	P21731	343 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	GSTM2	P28161	218 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CPOX	P36551	454 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	STT3A	P46977	705 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SLC6A12	P48065	614 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PLA2G16	P53816	162 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	RPS4X	P62701	263 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SARNP	P82979	210 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CDK16	Q00536	496 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	OCRL	Q01968	901 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SRY	Q05066	204 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TGM3	Q08188	693 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	DHX34	Q14147	1143 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	BEX5	Q5H9J7	111 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	DCST1	Q5T197	706 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LIPN	Q5VXI9	398 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TIGD3	Q6B0B8	471 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZNF470	Q6ECI4	717 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	OR2A2	Q6IF42	318 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TRIM40	Q6P9F5	258 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZNF474	Q6S9Z5	364 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TMIGD1	Q6UXZ0	262 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SLC29A4	Q7RTT9	530 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PEX26	Q7Z412	305 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	KIAA1328	Q86T90	577 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PRUNE1	Q86TP1	453 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	YRDC	Q86U90	279 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	THOC6	Q86W42	341 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CNGA4	Q8IV77	575 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	VSTM4	Q8IW00	320 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	DENND6A	Q8IWF6	608 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	C9orf40	Q8IXQ3	194 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LMNTD2	Q8IXW0	634 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CCDC170	Q8IYT3	715 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	OR2L5	Q8NG80	312 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SPPL2A	Q8TCT8	520 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ATG4A	Q8WYN0	398 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ROBO4	Q8WZ75	1007 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CCT6B	Q92526	530 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	CAVIN3	Q969G5	261 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ANKRD9	Q96BM1	317 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PGM2	Q96G03	612 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZC3HAV1L	Q96H79	300 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TMEM41A	Q96HV5	264 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ART5	Q96L15	291 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	RILP	Q96NA2	401 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	DGAT2	Q96PD7	388 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	KRT12	Q99456	494 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PIGQ	Q9BRB3	760 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ROGDI	Q9GZN7	287 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	REXO4	Q9GZR2	422 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	NT5DC2	Q9H857	520 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LYRM4	Q9HD34	91 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	FBXO6	Q9NRD1	293 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SYBU	Q9NX95	663 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TAS2R13	Q9NYV9	303 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	H2AFY2	Q9P0M6	372 aa	Predicted RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LPAR3	Q9UBY5	353 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	PTBP2	Q9UKA9	531 aa	Known RBP	4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TFR2	Q9UP52	801 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	MAPRE3	Q9UPY8	281 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	LAMP3	Q9UQV4	416 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SLC22A14	Q9Y267	594 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	WIF1	Q9Y5W5	379 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	SPACA6	W5XKT8	324 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	DNAJC13	O75165	2243 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZNF407	Q9C0G0	2248 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	ARID1A	O14497	2285 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	TLN2	Q9Y4G6	2542 aa		4.35	□□□□□ -1.71
ATXN3-229	ENST00000554672	C2orf92	A0A1B0GVN3	265 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	ANKDD1B	A6NHY2	528 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	SDR42E2	A6NKP2	422 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	OR6C76	A6NM76	312 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	CDC7	O00311	574 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	HS3ST1	O14792	307 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	CBR3	O75828	277 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	LRAT	O95237	230 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	TGM6	O95932	706 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	ZSCAN5DP	P0CG00	497 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	C1GALT1C1L	P0DN25	315 aa		4.34	□□□□□ -1.71
ATXN3-229	ENST00000554672	GNAZ	P19086	355 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms