RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PODNL1Q6PEZ8 512 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC35F3Q8IY50 421 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 VWA5B2Q8N398 1253 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 UBE2FQ969M7 185 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 PEX11GQ96HA9 241 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 PRTFDC1Q9NRG1 225 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 MAN2C1Q9NTJ4 1040 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 PLCXD1Q9NUJ7 323 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 AASSQ9UDR5 926 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 MKLN1Q9UL63 735 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 CHST2Q9Y4C5 530 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 HRO43593 1189 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 DUX1O43812 170 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 STX11O75558 287 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 GIMD1P0DJR0 217 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 DCKP27707 260 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 KRT20P35900 424 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 ILKQ13418 452 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 EXOSC7Q15024 291 aaKnown RBP24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 DCST2Q5T1A1 773 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 WDR5BQ86VZ2 330 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 PLXDC1Q8IUK5 500 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF619Q8N2I2 560 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 GALNT15Q8N3T1 639 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 DOK4Q8TEW6 326 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 ELF4Q99607 663 aaPredicted RBP24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 POLE3Q9NRF9 147 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 SEMA5BQ9P283 1151 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 REV1Q9UBZ9 1251 aa24.55■■□□□ 1.52
CCDC88C-205ENST00000553403 CBX7O95931 251 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 PCMT1P22061 227 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 RPS4Y1P22090 263 aaKnown RBP24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 CHMP24386 653 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC5A2P31639 672 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 IFNA8P32881 189 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 PLA2G5P39877 138 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 GPLD1P80108 840 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 PIGFQ07326 219 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 STX4Q12846 297 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 FOXD4Q12950 439 aaPredicted RBP24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC13A2Q13183 592 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 PTGES3Q15185 160 aaKnown RBP24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 EIPR1Q53HC9 387 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 GTF2IRD2BQ6EKJ0 949 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 CD300LDQ6UXZ3 194 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 GTF2IRD2Q86UP8 949 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 P3H2Q8IVL5 708 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 GALNT12Q8IXK2 581 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 COX18Q8N8Q8 333 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 MUL1Q969V5 352 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 ISOC1Q96CN7 298 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 DOK1Q99704 481 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 SPRTNQ9H040 489 aaPredicted RBP24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 ANKRD19PQ9H560 264 aa24.54■■□□□ 1.52
CCDC88C-205ENST00000553403 AGAP5A6NIR3 686 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 GNSP15586 552 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 PEX19P40855 299 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 ARRB1P49407 418 aaPredicted RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 CDC42P60953 191 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 COX10Q12887 443 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 SHBQ15464 509 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 AP1ARQ63HQ0 302 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF540Q8NDQ6 660 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 MMABQ96EY8 250 aaPredicted RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 RBCK1Q9BYM8 510 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF226Q9NYT6 803 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 TMEM9Q9P0T7 183 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 ERVK-18Q9QC07 812 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 KLHL3Q9UH77 587 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 GPR55Q9Y2T6 319 aaPredicted RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 KNL1Q8NG31 2342 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 CACNA1IQ9P0X4 2223 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 MPZL2O60487 215 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 NKX2-2O95096 273 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 GUSBP08236 651 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 GABRB1P18505 474 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 S1PR1P21453 382 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 IDH2P48735 452 aaKnown RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 TAS2R41P59536 307 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 HSD11B2P80365 405 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 MAT1AQ00266 395 aaKnown RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 SMN1Q16637 294 aaKnown RBP24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 TSSK4Q6SA08 328 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 DGAT2L6Q6ZPD8 337 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 CLIP4Q8N3C7 705 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 MORN4Q8NDC4 146 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 OR52R1Q8NGF1 315 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 ZFAND2BQ8WV99 257 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 CCDC90BQ9GZT6 254 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 IMPAD1Q9NX62 359 aa24.53■■□□□ 1.52
CCDC88C-205ENST00000553403 NINQ8N4C6 2090 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 AP3D1O14617 1153 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 RGS10O43665 173 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 DBIP07108 87 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 CCNYL3P0C7X3 344 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 GSSP48637 474 aa24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 RGS8P57771 180 aaPredicted RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 EEF1A1P68104 462 aaKnown RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 POU6F2P78424 691 aaPredicted RBP24.52■■□□□ 1.52
CCDC88C-205ENST00000553403 BNC1Q01954 994 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms