RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LIPJQ5W064 366 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ARSKQ6UWY0 536 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PRSS45Q7RTY3 260 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KLBQ86Z14 1044 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SAMD12Q8N8I0 201 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TOR1AIP2Q8NFQ8 470 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OR4K5Q8NGD3 323 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OR6T1Q8NGN1 323 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 BBS10Q8TAM1 723 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C16orf78Q8WTQ4 265 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SPRYD4Q8WW59 207 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ASZ1Q8WWH4 475 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PPCDCQ96CD2 204 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C12orf66Q96MD2 445 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TBX5Q99593 518 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TIMP4Q99727 224 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 RIOK2Q9BVS4 552 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DLL4Q9NR61 685 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CUEDC1Q9NWM3 386 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 RDH8Q9NYR8 311 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 MRPL15Q9P015 296 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CLCA2Q9UQC9 943 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 NTNG1Q9Y2I2 539 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 INSL5Q9Y5Q6 135 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TEX13CA0A0J9YWL9 993 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 A0A1W2PPK0 400 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 A0A1W2PRB8 838 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SERTM1A2A2V5 107 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 C7orf66A4D0T2 115 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ARRDC5A6NEK1 342 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 E9PI62 339 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 HMGN4O00479 90 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 NRG2O14511 850 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 GATBO75879 557 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 MT-ND4P03905 459 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ELFN1P0C7U0 828 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SLC1A3P43003 542 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 MTNR1AP48039 350 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 HNMTP50135 292 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 STXBP1P61764 594 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 DGCR2P98153 550 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CDK5Q00535 292 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF763Q0D2J5 394 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 HSPB3Q12988 150 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 MELKQ14680 651 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 PLPP4Q5VZY2 271 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 REEP3Q6NUK4 255 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SLC30A6Q6NXT4 461 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TRIM40Q6P9F5 258 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SLCO4C1Q6ZQN7 724 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 RTL4Q6ZR62 310 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 Q6ZTK2 550 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CFAP206Q8IYR0 622 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 IZUMO1Q8IYV9 350 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 OXR1Q8N573 874 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 LRRC17Q8N6Y2 441 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF527Q8NB42 609 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 PLA2G15Q8NCC3 412 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ST8SIA4Q92187 359 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 UFD1Q92890 307 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 RBPMSQ93062 196 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 AP2M1Q96CW1 435 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ZG16BQ96DA0 208 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ARSGQ96EG1 525 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 PDXPQ96GD0 296 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 METTL2AQ96IZ6 378 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 AIFM2Q9BRQ8 373 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 POLDIP3Q9BY77 421 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CHIAQ9BZP6 476 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 OR51J1Q9H342 316 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF334Q9HCZ1 680 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ENAMQ9NRM1 1142 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 OR6C2Q9NZP2 312 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ATP6V1HQ9UI12 483 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CHST2Q9Y4C5 530 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SPTBN5Q9NRC6 3674 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TCF20Q9UGU0 1960 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 IGLV3-16A0A075B6K0 115 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TRDV1A0A1B0GX56 115 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 A0A1W2PPL8 197 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 SOCS6O14544 535 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TOR1AO14656 332 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 KHNYNO15037 678 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 PPM1DO15297 605 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TSPAN6O43657 245 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CXCL14O95715 111 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TBX6O95947 436 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 TCRBP04435 133 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 C8GP07360 202 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ADRB1P08588 477 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CBSLP0DN79 551 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 NR2F6P10588 404 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ACP2P11117 423 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ATP1B2P14415 290 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 PPIBP23284 216 aaKnown RBP4.56□□□□□ -1.68
LIMA1-214ENST00000552783 STOMP27105 288 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 CBSP35520 551 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 DGKGP49619 791 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 ARHGDIBP52566 201 aa4.56□□□□□ -1.68
LIMA1-214ENST00000552783 POLR2LP62875 67 aaKnown RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms