RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CYP4B1P13584 511 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 POU3F2P20265 443 aaPredicted RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 TCEA1P23193 301 aaKnown RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 GRK2P25098 689 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 TACR1P25103 407 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 ASCL1P50553 236 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 AGFG1P52594 562 aaKnown RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 PNLIPRP2P54317 469 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 PSPHP78330 225 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 PSG6Q00889 435 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 SRYQ05066 204 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 KIAA0040Q15053 153 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 IKBIPQ70UQ0 350 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 IFNEQ86WN2 208 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 TRIM42Q8IWZ5 723 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 ZZZ3Q8IYH5 903 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS29-207ENST00000549970 DOCK7Q96N67 2140 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 LRTM1Q9HBL6 345 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 C1orf109Q9NX04 203 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 TAS2R10Q9NYW0 307 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 DKKL1Q9UK85 242 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 C19orf53Q9UNZ5 99 aaPredicted RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 WBP11Q9Y2W2 641 aaKnown RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 CCL27Q9Y4X3 112 aa14.85□□□□□ -0.03
VPS29-207ENST00000549970 TEP1Q99973 2627 aaKnown RBP14.85□□□□□ -0.03
VPS29-207ENST00000549970 SPG11Q96JI7 2443 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 MBD3L4A6NDZ8 208 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 MBD3L3A6NE82 208 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 MBD3L5A6NJ08 208 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 H0Y3Z8 333 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 UPK1AO00322 258 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 PLOD2O00469 737 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 RGS14O43566 566 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 SCO2O43819 266 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 TRIM13O60858 407 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 SLITRK5O94991 958 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 PRPH2P23942 346 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 SRD5A2P31213 254 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 EVI2BP34910 448 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 MRPS22P82650 360 aaKnown RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 ANKRD26P1Q6NSI1 321 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 POMZP3Q6PJE2 187 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 ENPP6Q6UWR7 440 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 C9orf106Q8NAJ2 232 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 OR2T11Q8NH01 316 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 MBD3L2Q8NHZ7 208 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 LRRC46Q96FV0 321 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 APOPT1Q96IL0 206 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 AMDHD1Q96NU7 426 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 SH3GL2Q99962 352 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 TUBA1CQ9BQE3 449 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 CALHM2Q9HA72 323 aa14.84□□□□□ -0.03
VPS29-207ENST00000549970 ZNF629Q9UEG4 869 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 RPH3AQ9Y2J0 694 aaPredicted RBP14.84□□□□□ -0.03
VPS29-207ENST00000549970 F8P00451 2351 aa14.83□□□□□ -0.03
VPS29-207ENST00000549970 B4DXG7 233 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 SYT5O00445 386 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 PDPK1O15530 556 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 AKAP10O43572 662 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 CPN1P15169 458 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 KIR2DL3P43628 341 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 RFX3P48380 749 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 STARP49675 285 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 GAS1P54826 345 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 GFRA1P56159 465 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 VSNL1P62760 191 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 RPL38P63173 70 aaKnown RBP14.83□□□□□ -0.04
VPS29-207ENST00000549970 HSPB3Q12988 150 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 GAB1Q13480 694 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 PLXDC2Q6UX71 529 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 Q6ZSR9 355 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 ZNF551Q7Z340 670 aaPredicted RBP14.83□□□□□ -0.04
VPS29-207ENST00000549970 OR2L13Q8N349 312 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 OR4K17Q8NGC6 315 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 ZPLD1Q8TCW7 415 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 RNF138Q8WVD3 245 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 RNASE6Q93091 150 aaKnown RBP14.83□□□□□ -0.04
VPS29-207ENST00000549970 CIDECQ96AQ7 238 aaPredicted RBP14.83□□□□□ -0.04
VPS29-207ENST00000549970 ELP4Q96EB1 424 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 DTNBP1Q96EV8 351 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 METTL2AQ96IZ6 378 aaKnown RBP14.83□□□□□ -0.04
VPS29-207ENST00000549970 SFXN2Q96NB2 322 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 TSSK3Q96PN8 268 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 FAM111AQ96PZ2 611 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 TRMOQ9BU70 441 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 TUBB1Q9H4B7 451 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 Q9N2J8 555 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 FLRT3Q9NZU0 649 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 CRIM1Q9NZV1 1036 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 PPP4R1LQ9P1A2 415 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 CBLCQ9ULV8 474 aa14.83□□□□□ -0.04
VPS29-207ENST00000549970 TMEM233B4DJY2 109 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 EEF1E1-BLOC1S5C9J1V9 151 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 NPIPB8E9PQR5 432 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 EEF1E1O43324 174 aaKnown RBP14.82□□□□□ -0.04
VPS29-207ENST00000549970 SPAG7O75391 227 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 PSMG1O95456 288 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 CHEK2O96017 543 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 CHRNGP07510 517 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms