RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NTMT1Q9BV86 223 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 ZBTB26Q9HCK0 441 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 AHSPQ9NZD4 102 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 WHRNQ9P202 907 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 CPSF2Q9P2I0 782 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 TNPO3Q9Y5L0 923 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 CCDC189A1A4V9 331 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 PLAUP00749 431 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 NR1H2P55055 460 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 DSCR4P56555 118 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF628Q5EBL2 1059 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 METTL2BQ6P1Q9 378 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 FADS6Q8N9I5 356 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 FNDC9Q8TBE3 224 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 FBF1Q8TES7 1133 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 TMEM171Q8WVE6 324 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 NSUN5Q96P11 429 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 PINK1Q9BXM7 581 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 KLHL4Q9C0H6 718 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 FARSBQ9NSD9 589 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 GRHL1Q9NZI5 618 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF337Q9Y3M9 751 aa16.03■□□□□ 0.16
CLSTN3-214ENST00000542663 GUCY1B2O75343 617 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 TNFRSF21O75509 655 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 KLHL2O95198 593 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 TBXA2RP21731 343 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 ARL1P40616 181 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 CCNG1P51959 295 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 CLDN20P56880 219 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 EFR3AQ14156 821 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 TECRLQ5HYJ1 363 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF704Q6ZNC4 412 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 SH2D5Q6ZV89 423 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 LARP4Q71RC2 724 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 CCDC91Q7Z6B0 441 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 PTGR2Q8N8N7 351 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 MAPK1IP1LQ8NDC0 245 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 OR2M3Q8NG83 312 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF675Q8TD23 568 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 ATP6V1E2Q96A05 226 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 DTNBP1Q96EV8 351 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 VSTM2LQ96N03 204 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 ERP44Q9BS26 406 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 DSN1Q9H410 356 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 PCTPQ9UKL6 214 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 SLC12A4Q9UP95 1085 aa16.02■□□□□ 0.16
CLSTN3-214ENST00000542663 SEC14L5O43304 696 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 ZSCAN12O43309 604 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 PNLIPRP2P54317 469 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 ATP5J2P56134 94 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 CALCOCO2Q13137 446 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 PON3Q15166 354 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 GGTA1PQ4G0N0 100 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 SGO1Q5FBB7 561 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 BEX5Q5H9J7 111 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 C10orf62Q5T681 223 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 MROH9Q5TGP6 573 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 TTC19Q6DKK2 380 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 PHC2Q8IXK0 858 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 OR4K17Q8NGC6 315 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 OR4N2Q8NGD1 307 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 OR5M1Q8NGP8 315 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 EFHD2Q96C19 240 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 CXorf56Q9H5V9 222 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 PPP4R1LQ9P1A2 415 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 PROCRQ9UNN8 238 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 ZNF175Q9Y473 711 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 FREM1Q5H8C1 2179 aa16.01■□□□□ 0.15
CLSTN3-214ENST00000542663 A0A096LPK6 155 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 AQP8O94778 261 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 PDYNP01213 254 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 HK1P19367 917 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 IL12BP29460 328 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 ALDH9A1P49189 494 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 IFT88Q13099 833 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 NAB1Q13506 487 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 FGFBP1Q14512 234 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 EXOC3L2Q2M3D2 409 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 RAET1LQ5VY80 246 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 HEPHL1Q6MZM0 1159 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 RPS27LQ71UM5 84 aaKnown RBP16■□□□□ 0.15
CLSTN3-214ENST00000542663 FAM214BQ7L5A3 538 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 CCDC116Q8IYX3 515 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 PLD6Q8N2A8 252 aaKnown RBP16■□□□□ 0.15
CLSTN3-214ENST00000542663 ZNF611Q8N823 705 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 OR4F6Q8NGB9 312 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 KAT2AQ92830 837 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 PHF21BQ96EK2 531 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 TMEM204Q9BSN7 226 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 RTN4RQ9BZR6 473 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 FOLH1BQ9HBA9 442 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 UTS2RQ9UKP6 389 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 PSME2Q9UL46 239 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 SAR1BQ9Y6B6 198 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 ZNF780BQ9Y6R6 833 aa16■□□□□ 0.15
CLSTN3-214ENST00000542663 OR2M5A3KFT3 312 aa15.99■□□□□ 0.15
CLSTN3-214ENST00000542663 RNF223E7ERA6 249 aa15.99■□□□□ 0.15
CLSTN3-214ENST00000542663 H3BML4 177 aa15.99■□□□□ 0.15
CLSTN3-214ENST00000542663 PPP6CO00743 305 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms