RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 J3QRK9 145 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 AP3D1O14617 1153 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 PLOD3O60568 738 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 DBTP11182 482 aaKnown RBP9.24□□□□□ -0.93
SS18-205ENST00000542420 CPMP14384 443 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 ALOX12P18054 663 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 NDUFV2P19404 249 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 MC3RP41968 323 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 TAS2R41P59536 307 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 RAB8AP61006 207 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 DUSP2Q05923 314 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 RAB40BQ12829 278 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 ZNF628Q5EBL2 1059 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 FHL5Q5TD97 284 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 SLC36A4Q6YBV0 504 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 SZRD1Q7Z422 152 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 TRIM48Q8IWZ4 208 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 RNF113BQ8IZP6 322 aaKnown RBP9.24□□□□□ -0.93
SS18-205ENST00000542420 NANOGP1Q8N7R0 232 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 SMRP1Q8NCR6 262 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 OR9A2Q8NGT5 310 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 TEX47Q8TBZ9 253 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 OIT3Q8WWZ8 545 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 OSTF1Q92882 214 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 RERGQ96A58 199 aaPredicted RBP9.24□□□□□ -0.93
SS18-205ENST00000542420 SLC38A2Q96QD8 506 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 UCK1Q9HA47 277 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 IL21RQ9HBE5 538 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 SACM1LQ9NTJ5 587 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 POU2F3Q9UKI9 436 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.24□□□□□ -0.93
SS18-205ENST00000542420 EXOSC1Q9Y3B2 195 aaKnown RBP9.24□□□□□ -0.93
SS18-205ENST00000542420 MN1Q10571 1320 aaPredicted RBP9.24□□□□□ -0.93
SS18-205ENST00000542420 TMEM129A0AVI4 362 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 KDM4EB2RXH2 506 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 H3BN98 237 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 M0R3H8 397 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 PRODHO43272 600 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ENTPD6O75354 484 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SEMA4FO95754 770 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 RAB36O95755 333 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 DBIP07108 87 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 POU2F1P14859 743 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 FEN1P39748 380 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 BLKP51451 505 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SKP1P63208 163 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ZNF91Q05481 1191 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 PIN1Q13526 163 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 MINDY4Q4G0A6 757 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 KIAA0895LQ68EN5 471 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 RPL13AP3Q6NVV1 102 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 FAM180BQ6P0A1 224 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SLC27A4Q6P1M0 643 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 KIAA1324Q6UXG2 1013 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 C11orf74Q86VG3 221 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ATCAYQ86WG3 371 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 RBM45Q8IUH3 476 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 CDRT4Q8N9R6 151 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 LSM14AQ8ND56 463 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 OR52P1PQ8NH57 321 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 WDR36Q8NI36 951 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 TMEM163Q8TC26 289 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ZNF350Q9GZX5 532 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SP140LQ9H930 580 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 KCNK12Q9HB15 430 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 C14orf105Q9NVL8 296 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 CRNNQ9UBG3 495 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 TESQ9UGI8 421 aaKnown RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 PNMA8BQ9ULN7 279 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 ZNF443Q9Y2A4 671 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 ARHGEF17Q96PE2 2063 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 HYKKA2RU49 373 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 KLF4O43474 513 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 UBXN7O94888 489 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 EML2O95834 649 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 CCNYL3P0C7X3 344 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 BMP4P12644 408 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 AK4P27144 223 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 MAP3K8P41279 467 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 NUDT6P53370 316 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 PRKAG1P54619 331 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 CLDN2P57739 230 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 CDC20Q12834 499 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ARMC4Q5T2S8 1044 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 FRRS1Q6ZNA5 592 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 IQCHQ86VS3 1027 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ZNF619Q8N2I2 560 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 C7orf57Q8NEG2 295 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 ST13P5Q8NFI4 369 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 RFKQ969G6 155 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SLC35A4Q96G79 324 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 TSSK6Q9BXA6 273 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 TMEM168Q9H0V1 697 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 SLC6A17Q9H1V8 727 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 POLMQ9NP87 494 aaPredicted RBP9.23□□□□□ -0.93
SS18-205ENST00000542420 C11orf16Q9NQ32 467 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 NDUFB11Q9NX14 153 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 NLGN3Q9NZ94 848 aa9.23□□□□□ -0.93
SS18-205ENST00000542420 A0A087WUU8 490 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 AGAP5A6NIR3 686 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms