RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SLC44A2Q8IWA5 706 aaPredicted RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 LIX1Q8N485 282 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 WDSUB1Q8N9V3 476 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 ACBD4Q8NC06 268 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 PSMA8Q8TAA3 256 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 SARAFQ96BY9 339 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 ZBED6CLQ96FA7 236 aaPredicted RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 JSRP1Q96MG2 331 aaPredicted RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 ADOQ96SZ5 270 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 OSBPL11Q9BXB4 747 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 METTL7AQ9H8H3 244 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 TMBIM4Q9HC24 238 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 SIRT3Q9NTG7 399 aaPredicted RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 FREM3P0C091 2139 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 CACNA1CQ13936 2221 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 TMEM120BA0PK00 339 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 REM1O75628 298 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 MYZAPP0CAP1 466 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 LAMP1P11279 417 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 PRPS2P11908 318 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 ACVR2AP27037 513 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 GDF1P27539 372 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 SLC1A6P48664 564 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 EMX2Q04743 252 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 CRYZQ08257 329 aaKnown RBP12.95□□□□□ -0.34
USP28-209ENST00000540925 BST1Q10588 318 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 ZNF155Q12901 538 aaPredicted RBP12.95□□□□□ -0.34
USP28-209ENST00000540925 HSPB3Q12988 150 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 GAB1Q13480 694 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 EFR3AQ14156 821 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 IL23RQ5VWK5 629 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 ANGPTL8Q6UXH0 198 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 R3HCC1LQ7Z5L2 792 aaKnown RBP12.95□□□□□ -0.34
USP28-209ENST00000540925 CAMKMTQ7Z624 323 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 OR7A2PQ8NGA2 310 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 OR5M9Q8NGP3 310 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 PPP1R14CQ8TAE6 165 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 NUDT8Q8WV74 236 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 COQ8BQ96D53 544 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 TMCO6Q96DC7 493 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 C1orf50Q9BV19 199 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 KCNK9Q9NPC2 374 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 SH3BP4Q9P0V3 963 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 CACNA1DQ01668 2161 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 CSMD1Q96PZ7 3565 aa12.95□□□□□ -0.34
USP28-209ENST00000540925 C2orf72A6NCS6 295 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 TTC36A6NLP5 189 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 PRSS44E7EML9 344 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 GNB5O14775 395 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 FADS1O60427 444 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 WDR1O75083 606 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 SNNO75324 88 aaPredicted RBP12.94□□□□□ -0.34
USP28-209ENST00000540925 NKX2-2O95096 273 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 CLDN14O95500 239 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 IL33O95760 270 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 CYP4B1P13584 511 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 HTR1EP28566 365 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 HPCAL1P37235 193 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 TRPC1P48995 793 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 RPL14P50914 215 aaKnown RBP12.94□□□□□ -0.34
USP28-209ENST00000540925 MANFP55145 182 aaKnown RBP12.94□□□□□ -0.34
USP28-209ENST00000540925 VASNQ6EMK4 673 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 TMEM211Q6ICI0 200 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 WDR53Q7Z5U6 358 aaPredicted RBP12.94□□□□□ -0.34
USP28-209ENST00000540925 LRRC34Q8IZ02 419 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 KRTCAP2Q8N6L1 136 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 FNDC5Q8NAU1 212 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 OR1J4Q8NGS1 313 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 ZFP28Q8NHY6 868 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 EFHD2Q96C19 240 aaPredicted RBP12.94□□□□□ -0.34
USP28-209ENST00000540925 TUBGCP3Q96CW5 907 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 TTYH2Q9BSA4 534 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 OR2B2Q9GZK3 357 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 PRDM14Q9GZV8 571 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 LDAHQ9H6V9 325 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 AKTIPQ9H8T0 292 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 KLRF1Q9NZS2 232 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 CBLCQ9ULV8 474 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 WIF1Q9Y5W5 379 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 TACC2O95359 2948 aa12.94□□□□□ -0.34
USP28-209ENST00000540925 FIGNL2A6NMB9 653 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 ANKRD28O15084 1053 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 IGKV1D-16P01601 117 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 HOXD4P09016 255 aaPredicted RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 GLI4P10075 376 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 G6PDP11413 515 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 PRPS1L1P21108 318 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 IL12BP29460 328 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 RPL3P39023 403 aaKnown RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 MASP1P48740 699 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 NUP107P57740 925 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 MAGOHP61326 146 aaKnown RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 STX3Q13277 289 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 PDCD2Q16342 344 aaPredicted RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 EIPR1Q53HC9 387 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 WLSQ5T9L3 541 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 SP5Q6BEB4 398 aaPredicted RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 MFSD12Q6NUT3 480 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 PLCZ1Q86YW0 608 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 ULK2Q8IYT8 1036 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms