RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NEDD4LQ96PU5 975 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 TMED9Q9BVK6 235 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 PCBD2Q9H0N5 130 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 MTIF3Q9H2K0 278 aaKnown RBP15.84■□□□□ 0.13
USP28-208ENST00000540438 PLCXD1Q9NUJ7 323 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 MUTYHQ9UIF7 546 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 PCDHGA3Q9Y5H0 932 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 E9PQ18 207 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 LOC110117498-PIK3R3F6TDL0 507 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 FAAHO00519 579 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CDC42EP2O14613 210 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CASC3O15234 703 aaKnown RBP15.84■□□□□ 0.13
USP28-208ENST00000540438 MAGEB4O15481 346 aaPredicted RBP15.84■□□□□ 0.13
USP28-208ENST00000540438 KCNK2O95069 426 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 ADH1BP00325 375 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 THY1P04216 161 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 MPIP34949 423 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 PCYT1AP49585 367 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 DUSP5Q16690 384 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 ENTPD8Q5MY95 495 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 PLEKHM3Q6ZWE6 761 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 SLC30A8Q8IWU4 369 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CLIP3Q96DZ5 547 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 SLC17A4Q9Y2C5 497 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 C2orf92A0A1B0GVN3 265 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 EFCAB10A6NFE3 127 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 LALBAP00709 142 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 AHRP35869 848 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 KHKP50053 298 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 PPP5CP53041 499 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 RPS25P62851 125 aaKnown RBP15.83■□□□□ 0.12
USP28-208ENST00000540438 SHC2P98077 582 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 ILKQ13418 452 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 SDE2Q6IQ49 451 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 ZAR1Q86SH2 424 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 OR52I1Q8NGK6 324 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 OR52P1PQ8NH57 321 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 TMEM80Q96HE8 168 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 MCHR1Q99705 422 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 FBXO8Q9NRD0 319 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 SLC7A7Q9UM01 511 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.83■□□□□ 0.12
USP28-208ENST00000540438 RWDD3Q9Y3V2 267 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 SGK494L7N484 410 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 SERPINI2O75830 405 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 PDE9AO76083 593 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 LGI1O95970 557 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 ALPPP05187 535 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 GYPBP06028 91 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 MRPL3P09001 348 aaKnown RBP15.83■□□□□ 0.12
USP28-208ENST00000540438 NR2F6P10588 404 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 CPMP14384 443 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 NT5EP21589 574 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 S100ZQ8WXG8 99 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 ZNF582Q96NG8 517 aaPredicted RBP15.83■□□□□ 0.12
USP28-208ENST00000540438 DPH1Q9BZG8 443 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 KLHL3Q9UH77 587 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 KLF15Q9UIH9 416 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 MGAT4BQ9UQ53 548 aa15.83■□□□□ 0.12
USP28-208ENST00000540438 SOBPA7XYQ1 873 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 SOCS6O14544 535 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 TNFSF8P32971 234 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 MAGEA10P43363 369 aaPredicted RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 GXYLT1Q4G148 440 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 FAM43BQ6ZT52 329 aaPredicted RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 PARGQ86W56 976 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 MORN4Q8NDC4 146 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 PFN4Q8NHR9 129 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 RNFT2Q96EX2 444 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 MRGPRX1Q96LB2 322 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 ACSS1Q9NUB1 689 aaPredicted RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 USP36Q9P275 1121 aaKnown RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 CES1P1Q9UKY3 287 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 UPK1BO75841 260 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 CSF2P04141 144 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 PCSK2P16519 638 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 HOXB6P17509 224 aaKnown RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 NDUFV2P19404 249 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 SERPINB1P30740 379 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 VSX2P58304 361 aaPredicted RBP15.82■□□□□ 0.12
USP28-208ENST00000540438 SLX4IPQ5VYV7 408 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 Q6ZS52 159 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 CYB561A3Q8NBI2 242 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 OR51L1Q8NGJ5 315 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 FAM3CQ92520 227 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 EVA1BQ9NVM1 165 aa15.82■□□□□ 0.12
USP28-208ENST00000540438 SDC2P34741 201 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 NR4A2P43354 598 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 HNRNPA0Q13151 305 aaKnown RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 ZIC1Q15915 447 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 KLHL12Q53G59 568 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 SPANXN2Q5MJ10 180 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 DGAT2L6Q6ZPD8 337 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 SAMD8Q96LT4 415 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 CCDC86Q9H6F5 360 aaKnown RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 IL21RQ9HBE5 538 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 SLC25A19Q9HC21 320 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 C20orf141Q9NUB4 165 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 MAT2BQ9NZL9 334 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 AP1M2Q9Y6Q5 423 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms