RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ARMCX1Q9P291 453 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 ANKMY1Q9P2S6 941 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 IL20RAQ9UHF4 553 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PURGQ9UJV8 347 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 PLEKHA6Q9Y2H5 1048 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 NTNG1Q9Y2I2 539 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 MAD1L1Q9Y6D9 718 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CLCA3PQ9Y6N3 262 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 UBE4BO95155 1302 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 ATRXP46100 2492 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ABCA7Q8IZY2 2146 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 TRAV9-2A0A087WT02 112 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 WASHC1A8K0Z3 465 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 WASH3PC4AMC7 463 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 H3BMH7 237 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 GPAA1O43292 621 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 TYROBPO43914 113 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 VPS26AO75436 327 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 STK17BO94768 372 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 LY6G6DO95868 133 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CA3P07451 260 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 THRBP10828 461 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 SDC1P18827 310 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CCNA2P20248 432 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 PSMA2P25787 234 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 PTPN6P29350 595 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 NF2P35240 595 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 RABIFP47224 123 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 HTR5AP47898 357 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CAMLGP49069 296 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 STK19P49842 368 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 PRELPP51888 382 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 KRTAP12-2P59991 146 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 MRPS6P82932 125 aaKnown RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 PUDPQ08623 228 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CYLC2Q14093 348 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 DPYSQ14117 519 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 PCK2Q16822 640 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ACSF3Q4G176 576 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 EPC2Q52LR7 807 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 MS4A13Q5J8X5 152 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 LINC00242Q5T6M2 205 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 FAM219BQ5XKK7 198 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 DMKNQ6E0U4 476 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 OR8G2PQ6IF36 304 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 LRRC8BQ6P9F7 803 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ATRAIDQ6UW56 229 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 WASH2PQ6VEQ5 465 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CENPUQ71F23 418 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 Q7L0L9 218 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 NET1Q7Z628 596 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 ADGRD2Q7Z7M1 963 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 MTURNQ8N3F0 131 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 Q8N7P7 452 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 STKLD1Q8NE28 680 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 OR4F17Q8NGA8 305 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ANKRD49Q8WVL7 239 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 SELENOMQ8WWX9 145 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CRYGNQ8WXF5 182 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 HPDLQ96IR7 371 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 C9orf85Q96MD7 179 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 VPS35Q96QK1 796 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 OR4F4Q96R69 305 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 TBCDQ9BTW9 1192 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ZBP1Q9H171 429 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ACTR8Q9H981 624 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 COG4Q9H9E3 785 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 TRPV5Q9NQA5 729 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 FAM114A2Q9NRY5 505 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 SOHLH2Q9NX45 425 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 DPM3Q9P2X0 92 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 PRODH2Q9UF12 536 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 CRLS1Q9UJA2 301 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 BARX2Q9UMQ3 279 aaPredicted RBP2.11□□□□□ -2.07
CD44-238ENST00000534296 HCFC1P51610 2035 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 SYNJ2O15056 1496 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 ABCC4O15439 1325 aa2.11□□□□□ -2.07
CD44-238ENST00000534296 FER1L5A0AVI2 2057 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 RAD54L2Q9Y4B4 1467 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 IGHV3OR16-12A0A075B7B8 117 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 A0A1W2PNU3 283 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ZSCAN5CA6NGD5 496 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ALOX15BO15296 676 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CLDN3O15551 220 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PPIHO43447 177 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 SDC3O75056 442 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 IDH1O75874 414 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 MFN2O95140 757 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 NDUFA7O95182 113 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CSF2P04141 144 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PGAM2P15259 253 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 DNAJB1P25685 340 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ACVR1BP36896 505 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CD86P42081 329 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 TRPC1P48995 793 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 DHPSP49366 369 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ARHGDIBP52566 201 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 POLR2FP61218 127 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 BDH1Q02338 343 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CD47Q08722 323 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms