RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 C1QTNF3-AMACRE9PGA6 284 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 RFXAPO00287 272 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 LATO43561 262 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 IL12RB1P42701 662 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 RAB28P51157 221 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 HOXC5Q00444 222 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 C18orf63Q68DL7 685 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 MRM1Q6IN84 353 aaKnown RBP18.06■□□□□ 0.48
VPS28-213ENST00000530983 RASSF6Q6ZTQ3 369 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 LHFPL3Q86UP9 236 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 VRK2Q86Y07 508 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 CACUL1Q86Y37 369 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ACOT4Q8N9L9 421 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ATP6V1C2Q8NEY4 427 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 TTLQ8NG68 377 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 SPPL3Q8TCT6 385 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 SLC7A6Q92536 515 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 AP3S1Q92572 193 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 RAB7BQ96AH8 199 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 CAMK1GQ96NX5 476 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 OR7D2Q96RA2 312 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ARHGDIGQ99819 225 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 MBNL1Q9NR56 388 aaKnown RBP18.06■□□□□ 0.48
VPS28-213ENST00000530983 INSL6Q9Y581 213 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 SYT5O00445 386 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 AIFM1O95831 613 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 CSF2P04141 144 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ACP5P13686 325 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 SLC1A3P43003 542 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 KIR2DL3P43628 341 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 OMPP47874 163 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 PRAMEF8Q5VWM4 474 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 PRAMEF7Q5VXH5 474 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 TYW3Q6IPR3 259 aaKnown RBP18.06■□□□□ 0.48
VPS28-213ENST00000530983 ZNF438Q7Z4V0 828 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 RAB42Q8N4Z0 105 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 OR56A1Q8NGH5 318 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 TRMT61BQ9BVS5 477 aaKnown RBP18.06■□□□□ 0.48
VPS28-213ENST00000530983 OSGEPL1Q9H4B0 414 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 PRSS16Q9NQE7 514 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ACSL5Q9ULC5 683 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 NDRG2Q9UN36 371 aaKnown RBP18.06■□□□□ 0.48
VPS28-213ENST00000530983 LIPT1Q9Y234 373 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 GSTK1Q9Y2Q3 226 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 GPSM3Q9Y4H4 160 aa18.06■□□□□ 0.48
VPS28-213ENST00000530983 ATP5A1P25705 553 aaKnown RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 TRHRP34981 398 aaPredicted RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 IFNGR2P38484 337 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 TRAM2Q15035 370 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 ABHD17CQ6PCB6 329 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 UBE2J2Q8N2K1 259 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 POGLUT1Q8NBL1 392 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 SUSD6Q92537 303 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 SLA2Q9H6Q3 261 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 EQTNQ9NQ60 294 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 IMP3Q9NV31 184 aaKnown RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 COMMD3Q9UBI1 195 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 CES1P1Q9UKY3 287 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 CH25HO95992 272 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 ALPPP05187 535 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 MYL9P24844 172 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 DRD3P35462 400 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 CDH11P55287 796 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 COL9A2Q14055 689 aaPredicted RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 YIF1BQ5BJH7 314 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 SLC30A6Q6NXT4 461 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 RFPL4BQ6ZWI9 263 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 OR4F15Q8NGB8 312 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 OR4Q3Q8NH05 313 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 FYTTD1Q96QD9 318 aaKnown RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 TEX101Q9BY14 249 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 RNF121Q9H920 327 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 SYNPO2LQ9H987 977 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 SLC6A20Q9NP91 592 aa18.05■□□□□ 0.48
VPS28-213ENST00000530983 NUFIP1Q9UHK0 495 aaKnown RBP18.05■□□□□ 0.48
VPS28-213ENST00000530983 TRDV1A0A1B0GX56 115 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 ERVH48-1M5A8F1 160 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 NFATC1O95644 943 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 GNSP15586 552 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 APEX1P27695 318 aaKnown RBP18.04■□□□□ 0.48
VPS28-213ENST00000530983 TRIM23P36406 574 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 MC3RP41968 323 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 ZNF155Q12901 538 aaPredicted RBP18.04■□□□□ 0.48
VPS28-213ENST00000530983 AADACL4Q5VUY2 407 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 ARIH2OSQ8N7S6 290 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 MOAP1Q96BY2 351 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 CLIP3Q96DZ5 547 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 RANGRFQ9HD47 186 aaPredicted RBP18.04■□□□□ 0.48
VPS28-213ENST00000530983 ENTPD4Q9Y227 616 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 CASKO14936 926 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 SURF4O15260 269 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 ZIC2O95409 532 aaPredicted RBP18.04■□□□□ 0.48
VPS28-213ENST00000530983 CERS1P27544 350 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 PKLRP30613 574 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 PPP3R1P63098 170 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 CAMK1Q14012 370 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 SLC48A1Q6P1K1 146 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 SPRED2Q7Z698 418 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 NOXA1Q86UR1 476 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 NKAIN4Q8IVV8 208 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms