RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CAV1Q03135 178 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CAPRIN1Q14444 709 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SEC23BQ15437 767 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 RFX4Q33E94 735 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TMEM95Q3KNT9 176 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TOR2AQ5JU69 321 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 LGSNQ5TDP6 509 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CLEC6AQ6EIG7 209 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 C1orf94Q6P1W5 598 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ASPGQ86U10 573 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 BPIFB6Q8NFQ5 453 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PRR7Q8TB68 274 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TRMT10AQ8TBZ6 339 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC7A6OSQ96CW6 309 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 OTUB1Q96FW1 271 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 RMND5BQ96G75 393 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC41A2Q96JW4 573 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ZBTB18Q99592 522 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 AIF1LQ9BQI0 150 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 MENTQ9BUN1 341 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 UCK2Q9BZX2 261 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ANKRA2Q9H9E1 313 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 HPF1Q9NWY4 346 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 COPS3Q9UNS2 423 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 POFUT2Q9Y2G5 429 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PCDHGB5Q9Y5G0 923 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 HRH3Q9Y5N1 445 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CEPT1Q9Y6K0 416 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A1B0GTL3 188 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 GNG14A0A1W2PPG7 69 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 CIB4A0PJX0 185 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 C10orf142B7Z368 130 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 NPIPA7E9PJI5 369 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 TBX1O43435 398 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 OR4F21O95013 312 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 TSPAN12O95859 305 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 C8GP07360 202 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 NPIPA8P0DM63 369 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 RPS3P23396 243 aaKnown RBP eCLIP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 MSX2P35548 267 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 NCF4Q15080 339 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC6A19Q695T7 634 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 TYW3Q6IPR3 259 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 ZC3H7AQ8IWR0 971 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 CYP4Z2PQ8N1L4 340 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 CLEC4FQ8N1N0 589 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 OR51Q1Q8NH59 317 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 APOBEC4Q8WW27 367 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 TRAF4Q9BUZ4 470 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 C1orf50Q9BV19 199 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 NLNQ9BYT8 704 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 DOCK7Q96N67 2140 aa7.4□□□□□ -1.23
LIMCH1-219ENST00000514096 TEX13CA0A0J9YWL9 993 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 A0A1B0GX78 115 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 CLDN25C9JDP6 229 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 C9JVG2 144 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 MKRN2OSH3BPM6 223 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ERVH48-1M5A8F1 160 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 CDC40O60508 579 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 KLHL18O94889 574 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 MATN4O95460 622 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 CD1DP15813 335 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 PSMA4P25789 261 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 CD79BP40259 229 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 STAT5AP42229 794 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 RGS1Q08116 209 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 CDC20Q12834 499 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 STX4Q12846 297 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 TRA2AQ13595 282 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 IL11RAQ14626 422 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 PDK4Q16654 411 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 HIST2H2ACQ16777 129 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 NDUFAF5Q5TEU4 345 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 HIST2H2AA3Q6FI13 130 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 KIAA0408Q6ZU52 694 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ASB18Q6ZVZ8 466 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 IFNEQ86WN2 208 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ADGRG5Q8IZF4 528 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 Q8NFD4 153 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF416Q9BWM5 594 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC12A9Q9BXP2 914 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 QRSL1Q9H0R6 528 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 WNT5BQ9H1J7 359 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ACSS3Q9H6R3 686 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF395Q9H8N7 513 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 FBXO8Q9NRD0 319 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 GPR83Q9NYM4 423 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF282Q9UDV7 671 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 PCDHGB4Q9UN71 923 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 RNF24Q9Y225 148 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 MN1Q10571 1320 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 ADGRG4Q8IZF6 3080 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 FAM159BA6NKW6 160 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 TXNL1O43396 289 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 DYRK3O43781 588 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 SNRPB2P08579 225 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 HK1P19367 917 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 TCN1P20061 433 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 MAGEA6P43360 314 aa7.39□□□□□ -1.23
LIMCH1-219ENST00000514096 AVPR1BP47901 424 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms