RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 GFAPP14136 432 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 CSNK2A2P19784 350 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 GP5P40197 560 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 ARL1P40616 181 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 MAPK12P53778 367 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 SLMAPQ14BN4 828 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 LARP4Q71RC2 724 aaKnown RBP eCLIP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 TBC1D1Q86TI0 1168 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 L3MBTL4Q8NA19 623 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 PYROXD1Q8WU10 500 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 EFHD2Q96C19 240 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 KLHL29Q96CT2 875 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 DTNBP1Q96EV8 351 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 TRMT61AQ96FX7 289 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 MED11Q9P086 117 aa18.24■□□□□ 0.51
SQSTM1-215ENST00000514093 PRR14LQ5THK1 2151 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 UQCRHLA0A096LP55 91 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 C1orf226A1L170 272 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 A8MV72 311 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 OVOL3O00110 214 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 SCO2O43819 266 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 UGDHO60701 494 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 SIX3O95343 332 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 CT45A8P0DMV1 189 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 CT45A9P0DMV2 189 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 PPP3CBP16298 524 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 IL12BP29460 328 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 EFR3AQ14156 821 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 FGFBP1Q14512 234 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 CT45A2Q5DJT8 189 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 LRRC8AQ8IWT6 810 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 CTAGE3PQ8IX95 158 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 OR4N2Q8NGD1 307 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 LILRB1Q8NHL6 650 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 GTPBP3Q969Y2 492 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 LRRC1Q9BTT6 524 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 ACTR6Q9GZN1 396 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 SLCO5A1Q9H2Y9 848 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 PPP4R1LQ9P1A2 415 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 SNX12Q9UMY4 172 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 ZNF175Q9Y473 711 aa18.23■□□□□ 0.51
SQSTM1-215ENST00000514093 TCRBV9S1A1TA0A576 114 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 OR2M5A3KFT3 312 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 GPRIN2O60269 458 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 ADAM11O75078 769 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 CLDN9O95484 217 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 KRT20P35900 424 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 SLC6A8P48029 635 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 IRF9Q00978 393 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 STX5Q13190 355 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 SGCBQ16585 318 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 SGO1Q5FBB7 561 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 NPSR1Q6W5P4 371 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 FADS6Q8N9I5 356 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 OR2M3Q8NG83 312 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 KCTD4Q8WVF5 259 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 NEUROG1Q92886 237 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 CNRIP1Q96F85 164 aaPredicted RBP18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 NOL11Q9H8H0 719 aaKnown RBP18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 PLSCR4Q9NRQ2 329 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 ADAM29Q9UKF5 820 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 LIPT1Q9Y234 373 aa18.22■□□□□ 0.51
SQSTM1-215ENST00000514093 FAM159BA6NKW6 160 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 SYCE1LA8MT33 242 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 OR7A17O14581 309 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 CLOCKO15516 846 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 NDUFS7O75251 213 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 SPRP35270 261 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 ALDH9A1P49189 494 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 ETFDHQ16134 617 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 CTU2Q2VPK5 515 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 KRTAP24-1Q3LI83 254 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 PAGE2Q7Z2X7 111 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 GBP7Q8N8V2 638 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 OR52B6Q8NGF0 335 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 RNF138Q8WVD3 245 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 KAT2AQ92830 837 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 ATP6V1E2Q96A05 226 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 TM4SF18Q96CE8 201 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 ZNF681Q96N22 645 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 BTBD9Q96Q07 612 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 STMN4Q9H169 189 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 SAYSD1Q9NPB0 183 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 AHSPQ9NZD4 102 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 SNX24Q9Y343 169 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 EMC9Q9Y3B6 208 aa18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 MAGED1Q9Y5V3 778 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-215ENST00000514093 IGHV4-39P01824 125 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 ALDH18A1P54886 795 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 RPS3AP61247 264 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 GRTP1Q5TC63 336 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 FRG2Q64ET8 278 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 TTC19Q6DKK2 380 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 COMMD6Q7Z4G1 85 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 MILR1Q7Z6M3 343 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 CCDC116Q8IYX3 515 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 CENPLQ8N0S6 344 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 METTL4Q8N3J2 472 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 OR6K3Q8NGY3 331 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 FRG2BQ96QU4 278 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms