RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ADOQ96SZ5 270 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 SERPINI1Q99574 410 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 TACO1Q9BSH4 297 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 BEX2Q9BXY8 128 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ALG9Q9H6U8 611 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ZBTB26Q9HCK0 441 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF337Q9Y3M9 751 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 PCDHA9Q9Y5H5 950 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 SVEP1Q4LDE5 3571 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 UQCRHLA0A096LP55 91 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 A0A1W2PP18 115 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 C1orf226A1L170 272 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 OR2M5A3KFT3 312 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SUPT3HB4E1H0 165 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 UBXN8O00124 270 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SEC14L5O43304 696 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 WIPF1O43516 503 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SUPT3HO75486 399 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 AQP8O94778 261 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 HK1P19367 917 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 CSNK2A2P19784 350 aaPredicted RBP12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 PNLIPRP2P54317 469 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 CLDN20P56880 219 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 RAB10P61026 200 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 MRPS22P82650 360 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 VLDLRP98155 873 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF844Q08AG5 666 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SLMAPQ14BN4 828 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 CPSF6Q16630 551 aaKnown RBP eCLIP12.75□□□□□ -0.371e-15■■■■□ 19.8
PRPF40A-211ENST00000493468 NRF1Q16656 503 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 TMEM249Q2WGJ8 235 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF672Q499Z4 452 aaPredicted RBP12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 GLYR1Q49A26 553 aaPredicted RBP12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 NCMAPQ5T1S8 102 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 ANKMY2Q8IV38 441 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 L3MBTL4Q8NA19 623 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 FBXO36Q8NEA4 188 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 OR2M3Q8NG83 312 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 ERP27Q96DN0 273 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 RHNO1Q9BSD3 238 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SAYSD1Q9NPB0 183 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SMYD2Q9NRG4 433 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 PPP4R1LQ9P1A2 415 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 JRKLQ9Y4A0 524 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 ANGPTL3Q9Y5C1 460 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 SNX8Q9Y5X2 465 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 AP4B1Q9Y6B7 739 aa12.75□□□□□ -0.37
PRPF40A-211ENST00000493468 E7ESA3 106 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 GPRIN2O60269 458 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 GUCY1B2O75343 617 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 BCAS2O75934 225 aaPredicted RBP12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 FESP07332 822 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 CD3EP07766 207 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 CT45A8P0DMV1 189 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 CT45A9P0DMV2 189 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 IL12BP29460 328 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 KRT20P35900 424 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 CTBP2P56545 445 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 PGGHGQ32M88 737 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 TRMT12Q53H54 448 aaKnown RBP12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 CT45A2Q5DJT8 189 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 LARP4Q71RC2 724 aaKnown RBP eCLIP12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 PAGE2Q7Z2X7 111 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 DTX2Q86UW9 622 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 STK32CQ86UX6 486 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 SPC24Q8NBT2 197 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 STEAP2Q8NFT2 490 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF675Q8TD23 568 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 TRPC4APQ8TEL6 797 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 ROBO4Q8WZ75 1007 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 TNFRSF13CQ96RJ3 184 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 KCNK17Q96T54 332 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 RBBP8Q99708 897 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 TRAF4Q9BUZ4 470 aaPredicted RBP12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 DSN1Q9H410 356 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 ESRP2Q9H6T0 727 aaKnown RBP12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 NMRAL1Q9HBL8 299 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 NGBQ9NPG2 151 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 GLRX2Q9NS18 164 aa12.74□□□□□ -0.37
PRPF40A-211ENST00000493468 MALRD1Q5VYJ5 2156 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 SYCE1LA8MT33 242 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 H3BML4 177 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 DLX3O60479 287 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PLGP00747 810 aaPredicted RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 KLK1P06870 262 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 MTHFD2P13995 350 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PCSK2P16519 638 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 EVI2BP34910 448 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 FEN1P39748 380 aaKnown RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 CASP9P55211 416 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 DSCR9P59020 149 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 LOXL1Q08397 574 aaPredicted RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 FASTKD3Q14CZ7 662 aaKnown RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 GGNQ86UU5 652 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 EXOC3L1Q86VI1 746 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 OR10H5Q8NGA6 315 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 VSTM2LQ96N03 204 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 CPNE1Q99829 537 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 HDHD5Q9BXW7 423 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms