RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZFP64Q9NPA5 681 aa14.93□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 FAM120CQ9NX05 1096 aaKnown RBP14.93□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ZIM2Q9NZV7 527 aa14.93□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 MRTO4Q9UKD2 239 aaKnown RBP14.93□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PCDHGB4Q9UN71 923 aa14.93□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PRSS51A0A1B0GVH4 220 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PRAMEF25A6NGN4 478 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 LRRC3CA6NJW4 275 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 C9JVG2 144 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SCN2BO60939 215 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 TRIM3O75382 744 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SLC22A3O75751 556 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 NKX2-2O95096 273 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 KCNH1O95259 989 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 HMGN2P05204 90 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ALOX5P09917 674 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SNTA1Q13424 505 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 TP53BP2Q13625 1128 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 LASP1Q14847 261 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 HYAL4Q2M3T9 481 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CMPK2Q5EBM0 449 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ANKRD46Q86W74 232 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 FAM109AQ8N4B1 249 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 TMEM251Q8N6I4 163 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 OR52N2Q8NGI0 321 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 OR5AK3PQ8NH89 298 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 GPR151Q8TDV0 419 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PIK3R3Q92569 461 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 JADE3Q92613 823 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 RMND5BQ96G75 393 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 C16orf58Q96GQ5 468 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 YIPF4Q9BSR8 244 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ZDHHC11Q9H8X9 412 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SDR39U1Q9NRG7 319 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 KLRF1Q9NZS2 232 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 OSGIN2Q9Y236 505 aa14.92□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 EML6Q6ZMW3 1958 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 GXYLT2A0PJZ3 443 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CDC40O60508 579 aaKnown RBP eCLIP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 IL33O95760 270 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PGRP06401 933 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 KRT16P08779 473 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CYP4B1P13584 511 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PTGDSP41222 190 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 MAGEA5P43359 124 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 MASP1P48740 699 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 DGKQP52824 942 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PSMD4P55036 377 aaKnown RBP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 STX1BP61266 288 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 HSF1Q00613 529 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 DUSP5Q16690 384 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 EXOSC6Q5RKV6 272 aaKnown RBP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SLC30A6Q6NXT4 461 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CDC73Q6P1J9 531 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 BHLHB9Q6PI77 547 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PACS2Q86VP3 889 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 MIER2Q8N344 545 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SLC16A11Q8NCK7 471 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 STON2Q8WXE9 905 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 NTNG2Q96CW9 530 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 THOC1Q96FV9 657 aaKnown RBP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CHMP6Q96FZ7 201 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 TMEM41AQ96HV5 264 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ZNF703Q9H7S9 590 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 GALNT9Q9HCQ5 603 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 GPATCH2Q9NW75 528 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 GIN1Q9NXP7 522 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 B4GALT7Q9UBV7 327 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 BTNL2Q9UIR0 455 aa14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 FAF1Q9UNN5 650 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 RNF103-CHMP3A0A140T963 221 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ICOSLGO75144 302 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CPSF4O95639 269 aaKnown RBP14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 IL6P05231 212 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 RFX3P48380 749 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 MRPL19P49406 292 aaKnown RBP14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PAOXQ6QHF9 649 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 COX18Q8N8Q8 333 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 RNF138Q8WVD3 245 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 OTUB1Q96FW1 271 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 CCDC115Q96NT0 180 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 OR52E6Q96RD3 313 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 STACQ99469 402 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SIKE1Q9BRV8 207 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 ACTRT3Q9BYD9 372 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 DEFB127Q9H1M4 99 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PIGUQ9H490 435 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 NPHS2Q9NP85 383 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 DUSP22Q9NRW4 184 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 PLSCR2Q9NRY7 297 aa14.9□□□□□ -0.02
MSH5-SAPCD1-206ENST00000491552 SNPHO15079 494 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 PDE9AO76083 593 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 STSP08842 583 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 RFPL3SP0C7P2 107 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 UQCRC2P22695 453 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ELAVL4P26378 380 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 EVI2BP34910 448 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 GUCY1A3Q02108 690 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 LRRC74AQ0VAA2 488 aa14.89□□□□□ -0.03
MSH5-SAPCD1-206ENST00000491552 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.89□□□□□ -0.033e-10■□□□□ 10.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms