RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RAB11BQ15907 218 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 CLLU1OSQ5K130 101 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 CNIH2Q6PI25 160 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 ZNF486Q96H40 463 aaPredicted RBP15.58■□□□□ 0.09
COL7A1-210ENST00000487017 KATNBL1Q9H079 304 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 ZNF701Q9NV72 531 aaPredicted RBP15.58■□□□□ 0.09
COL7A1-210ENST00000487017 DZANK1Q9NVP4 752 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 NUFIP1Q9UHK0 495 aaKnown RBP15.58■□□□□ 0.09
COL7A1-210ENST00000487017 A0A1B0GVG6 124 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 PITPNBP48739 271 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 PER3P56645 1201 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 LEG1Q6P5S2 330 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 ZNF534Q76KX8 674 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 METTL25Q8N6Q8 603 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 PINK1Q9BXM7 581 aa15.58■□□□□ 0.09
COL7A1-210ENST00000487017 PEX12O00623 359 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 KCNJ13O60928 360 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 CAPNS1P04632 268 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 TRNP1Q6NT89 227 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 OR2T4Q8NH00 348 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 C7orf34Q96L11 122 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 ALG8Q9BVK2 526 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 PCDHA9Q9Y5H5 950 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 ADRA1AP35348 466 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 OR6C4Q8NGE1 309 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 NINJ1Q92982 152 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 FAM46BQ96A09 425 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 RAD9AQ99638 391 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 CNIH4Q9P003 139 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 B3GNT3Q9Y2A9 372 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 UBR2Q8IWV8 1755 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 VSTM5A8MXK1 200 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 PKDCCQ504Y2 493 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 LCTLQ6UWM7 567 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 DAZLQ92904 295 aaKnown RBP15.58■□□□□ 0.08
COL7A1-210ENST00000487017 MMP28Q9H239 520 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 CSNK1G1Q9HCP0 422 aa15.58■□□□□ 0.08
COL7A1-210ENST00000487017 FAM221BA6H8Z2 402 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CENPBD1B2RD01 187 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 H7C417 338 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 GBX1Q14549 363 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 TTLL10Q6ZVT0 673 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 METTL2AQ96IZ6 378 aaKnown RBP15.57■□□□□ 0.08
COL7A1-210ENST00000487017 MS4A4EQ96PG1 132 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 HEPACAM2A8MVW5 462 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 TGM5O43548 720 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 MAGEA3P43357 314 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 SOX9P48436 509 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CST6Q15828 149 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CPOQ8IVL8 374 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.57■□□□□ 0.08
COL7A1-210ENST00000487017 PCDH10Q9P2E7 1040 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 SLC7A7Q9UM01 511 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 PPP1R3DO95685 299 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CBLL1Q75N03 491 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 ZER1Q7Z7L7 766 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CLEC14AQ86T13 490 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 KIF18BQ86Y91 864 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 OR5AR1Q8NGP9 310 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 NEIL2Q969S2 332 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 PDE7BQ9NP56 450 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 TCRBV21S2A2A0A5A6 115 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 GABRR3A8MPY1 467 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 EDIL3O43854 480 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 AMY2BP19961 511 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 SHC2P98077 582 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 SGCAQ16586 387 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 PDZD9Q8IXQ8 264 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 FTMTQ8N4E7 242 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 ADAMTS18Q8TE60 1221 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 DPH1Q9BZG8 443 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CNOT2Q9NZN8 540 aaKnown RBP15.57■□□□□ 0.08
COL7A1-210ENST00000487017 OR1A2Q9Y585 309 aa15.57■□□□□ 0.08
COL7A1-210ENST00000487017 CASC3O15234 703 aaKnown RBP15.56■□□□□ 0.08
COL7A1-210ENST00000487017 RAD51DO75771 328 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 RAB30Q15771 203 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 CTSL3PQ5NE16 218 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 OR5AK2Q8NH90 309 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 ARRDC2Q8TBH0 407 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SMARCD2Q92925 531 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 APBB3O95704 486 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 NPR2P20594 1047 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 FBLP22087 321 aaKnown RBP15.56■□□□□ 0.08
COL7A1-210ENST00000487017 GNRHRP30968 328 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 ACTBP60709 375 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 ACTG1P63261 375 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 FAM198BQ6UWH4 519 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 OR6Q1Q8NGQ2 317 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 OR5W2Q8NH69 310 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 OR2S2Q9NQN1 319 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 THSD1Q9NS62 852 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 KCNS2Q9ULS6 477 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 PRSS21Q9Y6M0 314 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 M0R129 80 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 APOC3P02656 99 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 CD3GP09693 182 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 C5AR1P21730 350 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 ZNF84P51523 738 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 GNMTQ14749 295 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 HES5Q5TA89 166 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms