RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 GCNT2Q8N0V5 402 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 CIARTQ8N365 385 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 ATP6V1E2Q96A05 226 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 MARK4Q96L34 752 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 COL21A1Q96P44 957 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 BTBD9Q96Q07 612 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 CDK15Q96Q40 435 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 BRINP2Q9C0B6 783 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 STMN4Q9H169 189 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 BRF2Q9HAW0 419 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 RRAGDQ9NQL2 400 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 PSMC3IPQ9P2W1 217 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 WIF1Q9Y5W5 379 aa11.78□□□□□ -0.52
HDAC6-227ENST00000485102 V9GYY5 206 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 SONP18583 2426 aaKnown RBP11.78□□□□□ -0.52
HDAC6-227ENST00000485102 H7C1Q1 480 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 TMCC2O75069 709 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 ALDOAP04075 364 aaKnown RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 SNRPAP09012 282 aaKnown RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 RBP1P09455 135 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PEPDP12955 493 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PAX1P15863 534 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 FEN1P39748 380 aaKnown RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 SERPINB8P50452 374 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PNLIPRP2P54317 469 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 GAS1P54826 345 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 B3GALT5-AS1P59052 145 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 GALNT1Q10472 559 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 IFT88Q13099 833 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 EFR3AQ14156 821 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 NNATQ16517 81 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 TRMT12Q53H54 448 aaKnown RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF474Q6S9Z5 364 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PTGR2Q8N8N7 351 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 OR52R1Q8NGF1 315 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PPP1R14CQ8TAE6 165 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 IGFBPL1Q8WX77 278 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 TMBIM1Q969X1 311 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 CNRIP1Q96F85 164 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 SFXN2Q96NB2 322 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PAFAH2Q99487 392 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 MDFIQ99750 246 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 GSX2Q9BZM3 304 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 NMRK1Q9NWW6 199 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 C6orf203Q9P0P8 240 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 CPSF2Q9P2I0 782 aaKnown RBP11.77□□□□□ -0.53
HDAC6-227ENST00000485102 FBXL2Q9UKC9 423 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PCTPQ9UKL6 214 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 PCNX3Q9H6A9 2034 aa11.77□□□□□ -0.53
HDAC6-227ENST00000485102 LINC01387J3KSC0 135 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 EMC8O43402 210 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 TNFRSF21O75509 655 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 ERAL1O75616 437 aaKnown RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 REM1O75628 298 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 CGAP01215 116 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 FAM153BP0C7A2 387 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 MYZAPP0CAP1 466 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 CD8BP10966 210 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 COL6A2P12110 1019 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 DPP4P27487 766 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 LOXP28300 417 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 TYK2P29597 1187 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 UGT2B10P36537 528 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 HSD17B3P37058 310 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 KIR2DL2P43627 348 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 DSCR4P56555 118 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 EEFSECP57772 596 aaKnown RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 DUSP2Q05923 314 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 FGFBP1Q14512 234 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 UAP1Q16222 522 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 FAM153CQ494X1 144 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 TTC19Q6DKK2 380 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 PLXDC2Q6UX71 529 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 BTLAQ7Z6A9 289 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 MILR1Q7Z6M3 343 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 YTHDF3Q7Z739 585 aaKnown RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 SAMD14Q8IZD0 417 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-227ENST00000485102 ADCY4Q8NFM4 1077 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 SPATA3Q8NHX4 192 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 RDH11Q8TC12 318 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 ACMSDQ8TDX5 336 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 KLHL29Q96CT2 875 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 Q96MF0 132 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 VSTM2LQ96N03 204 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 SLC39A3Q9BRY0 314 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 FAIM2Q9BWQ8 316 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 ELOVL6Q9H5J4 265 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 EHD3Q9NZN3 535 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 TRPS1Q9UHF7 1281 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 ZNF780BQ9Y6R6 833 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 STAB1Q9NY15 2570 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 PRR14LQ5THK1 2151 aa11.76□□□□□ -0.53
HDAC6-227ENST00000485102 SLC22A20A6NK97 555 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 KIAA1324LA8MWY0 1029 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-227ENST00000485102 B4DXG7 233 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 POC1B-GALNT4F8VUJ3 575 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 C16orf97H3BN30 126 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 PLOD3O60568 738 aa11.75□□□□□ -0.53
HDAC6-227ENST00000485102 PCSK2P16519 638 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms