RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CREBBPQ92793 2442 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1B0GVC2 190 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ATP6AP2A0A1C7CYW4 349 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1W2PS29 197 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 C1orf226A1L170 272 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CCDC151A5D8V7 595 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TTC36A6NLP5 189 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NPIPA2E9PIF3 369 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NPIPA3F8WFD2 350 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 GOLGA8RI6L899 631 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 MANBAO00462 879 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PPP6CO00743 305 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 AQP7O14520 342 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ADAM10O14672 748 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TP53I11O14683 189 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SUSD5O60279 629 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 HCN1O60741 890 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ULK1O75385 1050 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ERAL1O75616 437 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ATP6AP2O75787 350 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 IGHG3P01860 377 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CLPSP04118 112 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ATP1B1P05026 303 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ENO1P06733 434 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CT62P0C5K7 136 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CPMP14384 443 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PORP16435 677 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CSNK2A2P19784 350 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 HMOX2P30519 316 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PIGAP37287 484 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 MAGEA5P43359 124 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TMED10P49755 219 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NR0B1P51843 470 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PRKAA2P54646 552 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PKNOX1P55347 436 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NRG3P56975 720 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 KCNJ2P63252 427 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 RPP38P78345 283 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 FUT7Q11130 342 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 FOXO1Q12778 655 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 LCP2Q13094 533 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC10A1Q14973 349 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NTRK2Q16620 822 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 UNC50Q53HI1 259 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PRAMEF20Q5VT98 475 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC48A1Q6P1K1 146 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 NCCRP1Q6ZVX7 275 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TRILQ7L0X0 811 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 STK32CQ86UX6 486 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 MCEMP1Q8IX19 187 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 GSPT2Q8IYD1 628 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 C1orf52Q8N6N3 182 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 GBP7Q8N8V2 638 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF441Q8N8Z8 693 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 C17orf47Q8NEP4 570 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 OR10G3Q8NGC4 313 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 OR5M3Q8NGP4 307 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 METTL6Q8TCB7 284 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 UBLCP1Q8WVY7 318 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 RND1Q92730 232 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SDCCAG3Q96C92 435 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TM4SF18Q96CE8 201 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 KLHL29Q96CT2 875 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CCDC126Q96EE4 140 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 L3HYPDHQ96EM0 354 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SMC6Q96SB8 1091 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 HBEGFQ99075 208 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 DOHHQ9BU89 302 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 OR10A5Q9H207 317 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 EXO5Q9H790 373 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 PPCSQ9HAB8 311 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TUBA8Q9NY65 449 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 B4GALT7Q9UBV7 327 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TBK1Q9UHD2 729 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 DCDC2Q9UHG0 476 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF225Q9UK10 706 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CFL2Q9Y281 166 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SF3B6Q9Y3B4 125 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 LIPGQ9Y5X9 500 aa6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 CHCHD2Q9Y6H1 151 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-213ENST00000476903 TRGV5A0A0B4J1U4 118 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 H3BQF6 201 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 PCDH7O60245 1069 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 GLRA3O75311 464 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SNX4O95219 450 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ESRRBO95718 433 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SNRPB2P08579 225 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 MYL2P10916 166 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 PRF1P14222 555 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 KRT15P19012 456 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 GPX3P22352 226 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 TNFRSF8P28908 595 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 CHRNB4P30926 498 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 FEN1P39748 380 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 GSTM5P46439 218 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ALDH9A1P49189 494 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 MAN2A2P49641 1150 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 NAA20P61599 178 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ACSM2AQ08AH3 577 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms