RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 REM1O75628 298 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PSMG1O95456 288 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ESRRBO95718 433 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HRGP04196 525 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ENO1P06733 434 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HOXB4P17483 251 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TAC1P20366 129 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DNASE1P24855 282 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TIA1P31483 386 aaKnown RBP eCLIP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GSTM5P46439 218 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 STARP49675 285 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PKNOX1P55347 436 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CLDN15P56746 228 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ADAM8P78325 824 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LCP2Q13094 533 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EFR3AQ14156 821 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HEPACAMQ14CZ8 416 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LGSNQ5TDP6 509 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ENPP6Q6UWR7 440 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLXDC2Q6UX71 529 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SLC22A9Q8IVM8 553 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FADS6Q8N9I5 356 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OR4N2Q8NGD1 307 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GOT1L1Q8NHS2 421 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ACMSDQ8TDX5 336 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DACH2Q96NX9 599 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 STMN4Q9H169 189 aaPredicted RBP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GSTO2Q9H4Y5 243 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FOLH1BQ9HBA9 442 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TAS2R10Q9NYW0 307 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EMCNQ9ULC0 261 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PRR14LQ5THK1 2151 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HEATR5AQ86XA9 2040 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NSD1Q96L73 2696 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 C17orf51A8MQB3 221 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 G3V2L1 256 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RIPK2O43353 540 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TGM6O95932 706 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GSTA1P08263 222 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FOSL1P15407 271 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DDCP20711 480 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GRK2P25098 689 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HOXC12P31275 282 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MPIP34949 423 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FOXA1P55317 472 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ACSM2AQ08AH3 577 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FOXD4Q12950 439 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GAB1Q13480 694 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TEX35Q5T0J7 233 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ACSM2BQ68CK6 577 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FAM71E1Q6IPT2 247 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LARP4Q71RC2 724 aaKnown RBP eCLIP11.09□□□□□ -0.637e-7■■■□□ 15.4
MSH5-SAPCD1-205ENST00000476085 TRMT10CQ7L0Y3 403 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TRIM46Q7Z4K8 759 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 IFNEQ86WN2 208 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OR14L1PQ8NHC6 308 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RDH11Q8TC12 318 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EXOSC8Q96B26 276 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 INTS12Q96CB8 462 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KCNA7Q96RP8 456 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RBM24Q9BX46 236 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RTN4RQ9BZR6 473 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PIGMQ9H3S5 423 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GALNT8Q9NY28 637 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TAS2R9Q9NYW1 312 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NFU1Q9UMS0 254 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EDARQ9UNE0 448 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 C19orf53Q9UNZ5 99 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 STK38LQ9Y2H1 464 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 WBP11Q9Y2W2 641 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CCL27Q9Y4X3 112 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TIMM22Q9Y584 194 aa11.09□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NUP214P35658 2090 aaPredicted RBP11.08□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GNG14A0A1W2PPG7 69 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EEF1E1-BLOC1S5C9J1V9 151 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NPIPB8E9PQR5 432 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EEF1E1O43324 174 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SLITRK5O94991 958 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 RAF1P04049 648 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CRHP06850 196 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ANXA4P09525 319 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IFI6P09912 130 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DPP4P27487 766 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 HMOX2P30519 316 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MAP3K8P41279 467 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DGKQP52824 942 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DSCR4P56555 118 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EEF1A1P68104 462 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SRYQ05066 204 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ERCC6LQ2NKX8 1250 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DEFB113Q30KQ7 82 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CYP27C1Q4G0S4 372 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EEF1A1P5Q5VTE0 462 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR5M10Q6IEU7 315 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 AAGABQ6PD74 315 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SCIMPQ6UWF3 145 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 KRTAP1-3Q8IUG1 177 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SLC44A2Q8IWA5 706 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM76AQ8TAV0 307 aa11.08□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SMPDL3BQ92485 455 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms