RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MKS1Q9NXB0 559 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 TAS2R9Q9NYW1 312 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 WIF1Q9Y5W5 379 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 MED12LQ86YW9 2145 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 AKAP6Q13023 2319 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ZIC3O60481 467 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 CYP4B1P13584 511 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 OR5M10Q6IEU7 315 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ARSKQ6UWY0 536 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 TMEM107Q6UX40 140 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 RNF165Q6ZSG1 346 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 IKBIPQ70UQ0 350 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 CDH24Q86UP0 819 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 BANPQ8N9N5 519 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 C9orf106Q8NAJ2 232 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ZPLD1Q8TCW7 415 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 EFHD2Q96C19 240 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ELP4Q96EB1 424 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 METTL2AQ96IZ6 378 aaKnown RBP16.87■□□□□ 0.29
COL7A1-209ENST00000474432 TRIB1Q96RU8 372 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 TUBA1CQ9BQE3 449 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF559Q9BR84 538 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 MIEF1Q9NQG6 463 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 FLRT3Q9NZU0 649 aa16.87■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF629Q9UEG4 869 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-209ENST00000474432 HRNRQ86YZ3 2850 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-209ENST00000474432 MPDZO75970 2070 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 AZIN1O14977 448 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 FADS1O60427 444 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 SEC22BO75396 215 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 BMP5P22003 454 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 SRD5A2P31213 254 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 B3GALT5-AS1P59052 145 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 VSNL1P62760 191 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 GAB1Q13480 694 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 EFR3AQ14156 821 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 UGT3A2Q3SY77 523 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF385BQ569K4 471 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 PLXDC2Q6UX71 529 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 TRABD2AQ86V40 505 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 TRIM42Q8IWZ5 723 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 CCDC63Q8NA47 563 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 CALHM2Q9HA72 323 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 LRTM1Q9HBL6 345 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 ITGB1BP2Q9UKP3 347 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 MRPS18CQ9Y3D5 142 aaKnown RBP16.86■□□□□ 0.29
COL7A1-209ENST00000474432 DNAJC15Q9Y5T4 150 aa16.86■□□□□ 0.29
COL7A1-209ENST00000474432 TLDC2A0PJX2 215 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 FAM221AA4D161 298 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 DVL2O14641 736 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 TRIM13O60858 407 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 COQ9O75208 318 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 CRCPO75575 148 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 SLITRK5O94991 958 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 CHRNGP07510 517 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 NUDT17P0C025 328 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 SDC1P18827 310 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 GRK2P25098 689 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ALDH3A1P30838 453 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ARRB2P32121 409 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 MAP3K8P41279 467 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 STARP49675 285 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 LHX2P50458 406 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 PSPHP78330 225 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF155Q12901 538 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 RFTN2Q52LD8 501 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 KANK2Q63ZY3 851 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ANKRD26P1Q6NSI1 321 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF551Q7Z340 670 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 FADS6Q8N9I5 356 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 OR14L1PQ8NHC6 308 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 NRGNQ92686 78 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 HOXB13Q92826 284 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 ZNF764Q96H86 408 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 APOPT1Q96IL0 206 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 UCN2Q96RP3 112 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 LMF2Q9BU23 707 aaKnown RBP16.85■□□□□ 0.29
COL7A1-209ENST00000474432 C1orf109Q9NX04 203 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 TAS2R10Q9NYW0 307 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 JKAMPQ9P055 326 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 SENP1Q9P0U3 644 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 SLC17A7Q9P2U7 560 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 LGALS13Q9UHV8 139 aa16.85■□□□□ 0.29
COL7A1-209ENST00000474432 TMEM233B4DJY2 109 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 SLC28A1O00337 649 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 TBX19O60806 448 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 IL2RAP01589 272 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 FGF4P08620 206 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 IFI6P09912 130 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 IL12BP29460 328 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 ASCL1P50553 236 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 AGFG1P52594 562 aaKnown RBP16.84■□□□□ 0.29
COL7A1-209ENST00000474432 CLDN18P56856 261 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 FOXF2Q12947 444 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 MYBPHQ13203 477 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 CYP27C1Q4G0S4 372 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 CES4AQ5XG92 561 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 RNASE6Q93091 150 aaKnown RBP16.84■□□□□ 0.29
COL7A1-209ENST00000474432 GFM2Q969S9 779 aaKnown RBP16.84■□□□□ 0.29
COL7A1-209ENST00000474432 TRMOQ9BU70 441 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms