RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SEC23BQ15437 767 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 ZNF385BQ569K4 471 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 TOR2AQ5JU69 321 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 DCST1Q5T197 706 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 ZDHHC20Q5W0Z9 365 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 CNIH2Q6PI25 160 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 ANGPTL8Q6UXH0 198 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 CD300LDQ6UXZ3 194 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 CEACAM20Q6UY09 585 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 GLRX5Q86SX6 157 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 PDZD3Q86UT5 571 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 THOC6Q86W42 341 aaKnown RBP9.03□□□□□ -0.96
HDAC3-205ENST00000469550 DCAF4L2Q8NA75 395 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 TMEM145Q8NBT3 493 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 CADM4Q8NFZ8 388 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 HUS1BQ8NHY5 278 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 FGF11Q92914 225 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 MTERF3Q96E29 417 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 ALG14Q96F25 216 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 WRAP53Q9BUR4 548 aaKnown RBP9.03□□□□□ -0.96
HDAC3-205ENST00000469550 ATG10Q9H0Y0 220 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 PIGUQ9H490 435 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 SGK2Q9HBY8 427 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 MCUBQ9NWR8 336 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 GLTPQ9NZD2 209 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 NLKQ9UBE8 527 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 SLC23A1Q9UHI7 598 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 STON1Q9Y6Q2 735 aa9.03□□□□□ -0.96
HDAC3-205ENST00000469550 TRBV4-1A0A0J9YWV2 114 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PIPSLA2A3N6 862 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 INMT-MINDY4F8WBC2 141 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 CDK2AP1O14519 115 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 C6orf47O95873 294 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 ZNF8P17098 575 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SPINK2P20155 84 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 ELAVL4P26378 380 aaKnown RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PER3P56645 1201 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SNRPD2P62316 118 aaKnown RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SIM1P81133 766 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 EFNB1P98172 346 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 ZNF763Q0D2J5 394 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 NDUFA9Q16795 377 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SLC5A12Q1EHB4 618 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 FLYWCH1Q4VC44 716 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 REEP3Q6NUK4 255 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 MZT2AQ6P582 158 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PAQR6Q6TCH4 344 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 UBE2J2Q8N2K1 259 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 TCEANCQ8N8B7 351 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 OR52P1PQ8NH57 321 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 TM9SF4Q92544 642 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 C1GALT1C1Q96EU7 318 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PDXPQ96GD0 296 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 FUZQ9BT04 418 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 POLR2J3Q9H1A7 115 aaKnown RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PCED1AQ9H1Q7 454 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 NARFLQ9H6Q4 476 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 RANBP3Q9H6Z4 567 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 WSB2Q9NYS7 404 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 ADAM30Q9UKF2 790 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 ING4Q9UNL4 249 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PPIL1Q9Y3C6 166 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SPIN1Q9Y657 262 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-205ENST00000469550 CLCA3PQ9Y6N3 262 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 LAMA1P25391 3075 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 PIKFYVEQ9Y2I7 2098 aa9.02□□□□□ -0.97
HDAC3-205ENST00000469550 SPAARA0A1B0GVQ0 90 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 GNG14A0A1W2PPG7 69 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 E7EQ34 232 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 QSOX1O00391 747 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 BET1O15155 118 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 HYAL3O43820 417 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SLC19A2O60779 497 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 LATS1O95835 1130 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 FURINP09958 794 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 ZNF883P0CG24 379 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 GNSP15586 552 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SSTR4P31391 388 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 ETV5P41161 510 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 ETV1P50549 477 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 GAS1P54826 345 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 LIM2P55344 173 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SEMG2Q02383 582 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 RAB40BQ12829 278 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 DDX39BQ13838 428 aaKnown RBP9.01□□□□□ -0.97
HDAC3-205ENST00000469550 DSG2Q14126 1118 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SF1Q15637 639 aaKnown RBP9.01□□□□□ -0.97
HDAC3-205ENST00000469550 FAM214AQ32MH5 1076 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 CRTC2Q53ET0 693 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-205ENST00000469550 RETSATQ6NUM9 610 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 PGBD2Q6P3X8 592 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 CRTC1Q6UUV9 634 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 TEX261Q6UWH6 196 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 TMEM107Q6UX40 140 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 GRAMD2AQ8IUY3 354 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 VRK3Q8IV63 474 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 LINC00471Q8N535 108 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SLC37A3Q8NCC5 494 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 OR7G3Q8NG95 312 aa9.01□□□□□ -0.97
HDAC3-205ENST00000469550 SKA2Q8WVK7 121 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms