RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF250P15622 560 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 FUT1P19526 365 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ENDOUP21128 410 aaKnown RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 MLLT3P42568 568 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 LIMS1P48059 325 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 AGFG1P52594 562 aaKnown RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 CDH11P55287 796 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 PCBP3P57721 371 aaKnown RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 TAS2R41P59536 307 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 RPS7P62081 194 aaKnown RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 POU6F2P78424 691 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 MAB21L1Q13394 359 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 TJAP1Q5JTD0 557 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 FAM71E1Q6IPT2 247 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 TEX47Q8TBZ9 253 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 NXPE3Q969Y0 559 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 COL26A1Q96A83 441 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 MED28Q9H204 178 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 TMEM38AQ9H6F2 299 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 PDPK1O15530 556 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ORC5O43913 435 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 FCER2P06734 321 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 GNSP15586 552 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ELK1P19419 428 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 SLC6A11P48066 632 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 HMGA2P52926 109 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 OR10A3P58181 314 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 RRAS2P62070 204 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 TAP2Q03519 686 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 RAET1GQ6H3X3 334 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF547Q8IVP9 402 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ANKK1Q8NFD2 765 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF431Q8TF32 576 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 HMGB4Q8WW32 186 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 SLC5A11Q8WWX8 675 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 AP3S1Q92572 193 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 SGPP1Q9BX95 441 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 CHIAQ9BZP6 476 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ISG20L2Q9H9L3 353 aaKnown RBP11.69□□□□□ -0.54
HDAC4-208ENST00000463007 CAPN10Q9HC96 672 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF224Q9NZL3 707 aa11.69□□□□□ -0.54
HDAC4-208ENST00000463007 PRRT4C9JH25 899 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 HMGN4O00479 90 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 C1orf105O95561 183 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 RB1P06400 928 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 CD3GP09693 182 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 ENPP1P22413 925 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 PRKACBP22694 351 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 UQCRC2P22695 453 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 RFX3P48380 749 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 CLDN2P57739 230 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 RPA4Q13156 261 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 PLK5Q496M5 336 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 PIP5KL1Q5T9C9 394 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 LAMTOR1Q6IAA8 161 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF765Q7L2R6 523 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 GRASPQ7Z6J2 395 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 IZUMO1Q8IYV9 350 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 ADGRF3Q8IZF5 1079 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SPRYD4Q8WW59 207 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 LINC00615Q96LM1 132 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 C17orf62Q9BQA9 187 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SPATA9Q9BWV2 254 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SLC28A3Q9HAS3 691 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SLC13A4Q9UKG4 626 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 PLPP1O14494 284 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 TSPAN4O14817 238 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 REM1O75628 298 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 HRGP04196 525 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 AHRP35869 848 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 MAPK9P45984 424 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SNRPGP62308 76 aaKnown RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SLC3A1Q07837 685 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 C9orf64Q5T6V5 341 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 ARL9Q6T311 187 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 CDH24Q86UP0 819 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 SMG7Q92540 1137 aaKnown RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 C16orf58Q96GQ5 468 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 TEFMQ96QE5 360 aaKnown RBP11.68□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF607Q96SK3 696 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 TMEM245Q9H330 911 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 RABL2BQ9UNT1 228 aa11.68□□□□□ -0.54
HDAC4-208ENST00000463007 PRAMEF27A3QJZ7 478 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 OTOL1A6NHN0 477 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 FAM170BA6NMN3 283 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 FAAHO00519 579 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GABRPO00591 440 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 MAGEB4O15481 346 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 NUPL2O15504 423 aaKnown RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 DPM1O60762 260 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ALPPP05187 535 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 NNMTP40261 264 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PXNP49023 591 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ABATP80404 500 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 TMEM240Q5SV17 173 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 MEDAGQ5VYS4 303 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 KIF18BQ86Y91 864 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 CCDC116Q8IYX3 515 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 LRRC20Q8TCA0 184 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 WFIKKN2Q8TEU8 576 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms