RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 C10orf142B7Z368 130 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 P2RX6O15547 441 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 FCMRO60667 390 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 GPX5O75715 221 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 ETV6P41212 452 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 PDX1P52945 283 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 C1DQ13901 141 aaKnown RBP14.1□□□□□ -0.15
LDLR-202ENST00000455727 GPR18Q14330 331 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 TCEA2Q15560 299 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 DECR1Q16698 335 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 DEFB134Q4QY38 66 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 EOGTQ5NDL2 527 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 MANEAQ5SRI9 462 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 FRRS1Q6ZNA5 592 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 DGLUCYQ7Z3D6 616 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 PRICKLE2Q7Z3G6 844 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 OR52I1Q8NGK6 324 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 TEX47Q8TBZ9 253 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 TMEM163Q8TC26 289 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 C6orf106Q9H6K1 298 aaPredicted RBP14.1□□□□□ -0.15
LDLR-202ENST00000455727 CTPS2Q9NRF8 586 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 ZNF232Q9UNY5 417 aa14.1□□□□□ -0.15
LDLR-202ENST00000455727 KRBA1A5PL33 1030 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 OR6C74A6NCV1 312 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 FAM170BA6NMN3 283 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 AP3D1O14617 1153 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 ZSCAN9O15535 394 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 RAB36O95755 333 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 IMPDH2P12268 514 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CKMT1AP12532 417 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CPMP14384 443 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 POLR2CP19387 275 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 PSMA1P25786 263 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 OMPP47874 163 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CD97P48960 835 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 SNRPNP63162 240 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 SNAPC1Q16533 368 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 TMEM92Q6UXU6 159 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 ZNF730Q6ZMV8 503 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 RRM2BQ7LG56 351 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 BCDIN3DQ7Z5W3 292 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 RBM12BQ8IXT5 1001 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 PIGXQ8TBF5 258 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 ACOT11Q8WXI4 607 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 ZFYVE21Q9BQ24 234 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 NEURL2Q9BR09 285 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 PRRG3Q9BZD7 231 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 SAP130Q9H0E3 1048 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 NDUFB11Q9NX14 153 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 A0A075B6Q4 140 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CPSF4LA6NMK7 179 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 PRODHO43272 600 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 OR5F1O95221 314 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 HBQ1P09105 142 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 IFI6P09912 130 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 PORP16435 677 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 ALOX12P18054 663 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 TRHRP34981 398 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 ILF3Q12906 894 aaKnown RBP eCLIP14.09□□□□□ -0.158e-8■■■□□ 17.5
LDLR-202ENST00000455727 PUS10Q3MIT2 529 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 C3orf38Q5JPI3 329 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 SNX29P2Q8IUI4 249 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 TRIM48Q8IWZ4 208 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 PEX5LQ8IYB4 626 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CLIP4Q8N3C7 705 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 ZCCHC10Q8TBK6 192 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 CDS1Q92903 461 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 COL26A1Q96A83 441 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 PRR14Q9BWN1 585 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 PLA2G12AQ9BZM1 189 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 POLR2J2Q9GZM3 115 aaKnown RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 FGF20Q9NP95 211 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 POT1Q9NUX5 634 aa14.09□□□□□ -0.15
LDLR-202ENST00000455727 C19orf53Q9UNZ5 99 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 ZNF443Q9Y2A4 671 aaPredicted RBP14.09□□□□□ -0.15
LDLR-202ENST00000455727 PNMA8CA0A1B0GUJ8 204 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 C2orf74A8MZ97 194 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 MYL12BO14950 172 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 UBXN7O94888 489 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 THBS1P07996 1170 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 FPR3P25089 353 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 STAT5AP42229 794 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 GAS1P54826 345 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 RGS8P57771 180 aaPredicted RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 RPS3AP61247 264 aaKnown RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 SIM1P81133 766 aaPredicted RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 RAB40BQ12829 278 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 DUSP8Q13202 625 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 LARS2Q15031 903 aaKnown RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 EXOSC6Q5RKV6 272 aaKnown RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 TYW3Q6IPR3 259 aaKnown RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 SLC36A4Q6YBV0 504 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 Q6ZSR6 202 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 GPBAR1Q8TDU6 330 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 SLC38A2Q96QD8 506 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 EGLN3Q9H6Z9 239 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 SP140LQ9H930 580 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 CACYBPQ9HB71 228 aaKnown RBP14.08□□□□□ -0.16
LDLR-202ENST00000455727 DOLKQ9UPQ8 538 aa14.08□□□□□ -0.16
LDLR-202ENST00000455727 WDR45Q9Y484 360 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms