RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CDC123O75794 336 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 OPN1SWP03999 348 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 GLAP06280 429 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 G6PDP11413 515 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 CPOXP36551 454 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SORDQ00796 357 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 HTR4Q13639 388 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 RNASE10Q5GAN6 216 aaKnown RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 ZNF704Q6ZNC4 412 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 LMLNQ96KR4 655 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 PIP5K1AQ99755 562 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC29A3Q9BZD2 475 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 HPGDSO60760 199 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 ALPIP09923 528 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 HAAOP46952 286 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 DHPSP49366 369 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 CRYZQ08257 329 aaKnown RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC27A4Q6P1M0 643 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 LCN9Q8WX39 176 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 DNASE1L2Q92874 299 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 NTAN1Q96AB6 310 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC35G5Q96KT7 338 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC6A7Q99884 636 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 TAPBPLQ9BX59 468 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 FBRSL1Q9HCM7 1045 aaKnown RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 MED31Q9Y3C7 131 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 PHRF1Q9P1Y6 1649 aaKnown RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 LSSP48449 732 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 STXBP1P61764 594 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 SLC10A6Q3KNW5 377 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 OR6K6Q8NGW6 343 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ZNF461Q8TAF7 563 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 MAPK15Q8TD08 544 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 NMUR1Q9HB89 426 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 EQTNQ9NQ60 294 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 SLC17A6Q9P2U8 582 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 C20orf202A1L168 122 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PDX1P52945 283 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 BCL2A1Q16548 175 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ZNF648Q5T619 568 aaPredicted RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 MED27Q6P2C8 311 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 C17orf99Q6UX52 265 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 TIPARPQ7Z3E1 657 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 OR4E2Q8NGC2 313 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 EBPLQ9BY08 206 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PCDHB14Q9Y5E9 798 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 MATN3O15232 486 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 INSIG1O15503 277 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 RPL10P27635 214 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 FRKP42685 505 aaPredicted RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 MINDY4Q4G0A6 757 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 GPR157Q5UAW9 335 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 TSSK4Q6SA08 328 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 LSMEM2Q8N112 164 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 SLC35A5Q9BS91 424 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 CCM2Q9BSQ5 444 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 OR11A1Q9GZK7 315 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 NCDNQ9UBB6 729 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 LIPT1Q9Y234 373 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 MYH7BA7E2Y1 1941 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 M0QZK8 103 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 GGCTO75223 188 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 AMY2AP04746 511 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ERCC1P07992 297 aaPredicted RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 ST3GAL3Q11203 375 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ADPRMQ3LIE5 342 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ZNF678Q5SXM1 525 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 B3GNT9Q6UX72 402 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 P4HA3Q7Z4N8 544 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 SERINC5Q86VE9 423 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 GKN2Q86XP6 184 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 NAXEQ8NCW5 288 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PUS1Q9Y606 427 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP40-208ENST00000450966 TOPAZ1Q8N9V7 1692 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 TNFP01375 233 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ALPPP05187 535 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 OXTRP30559 389 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 SNTB1Q13884 538 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 UGT3A2Q3SY77 523 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 SOHLH1Q5JUK2 328 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 OR4F3Q6IEY1 312 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 ZNF551Q7Z340 670 aaPredicted RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 OR10Q1Q8NGQ4 319 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 BRIX1Q8TDN6 353 aaKnown RBP12.63□□□□□ -0.39
USP40-208ENST00000450966 ATG10Q9H0Y0 220 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PLSCR3Q9NRY6 295 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PLCXD1Q9NUJ7 323 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 TDP1Q9NUW8 608 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 PCDHGA1Q9Y5H4 931 aa12.63□□□□□ -0.39
USP40-208ENST00000450966 TRBV23OR9-2A0A075B6M9 112 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 FAM221BA6H8Z2 402 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 PHOX2AO14813 284 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 JUNP05412 331 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 AKAIN1P0CW23 69 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CBSLP0DN79 551 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 ZNF20P17024 532 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CBSP35520 551 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 TLE4Q04727 773 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 MGAT3Q09327 533 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms