RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TCTE1Q5JU00 501 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 LMNTD1Q8N9Z9 388 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 RHBDD1Q8TEB9 315 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 SERINC2Q96SA4 455 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 GSTO2Q9H4Y5 243 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 PELI2Q9HAT8 420 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 COPZ2Q9P299 210 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 MGAT4CQ9UBM8 478 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 A0A0A6YYH2 397 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 A6NJ64 397 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 EEF1E1-BLOC1S5C9J1V9 151 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 UGT2B10P36537 528 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 CLDN10P78369 228 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 DCDC5Q6ZRR9 648 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 CREB3L1Q96BA8 519 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 CCNL2Q96S94 520 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-209ENST00000438120 ABCG5Q9H222 651 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 OR51B6Q9H340 312 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 RGPD8O14715 1765 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-209ENST00000438120 KLHL33A6NCF5 533 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 H2AFB2P0C5Z0 115 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 WDR5P61964 334 aaKnown RBP16.27■□□□□ 0.19
PTPRF-209ENST00000438120 AWAT2Q6E213 333 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 HACD2Q6Y1H2 254 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 CFAP77Q6ZQR2 320 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF440Q8IYI8 595 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 GPR37L1O60883 481 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 SMAD2Q15796 467 aaKnown RBP16.27■□□□□ 0.19
PTPRF-209ENST00000438120 LRRN1Q6UXK5 716 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 RNF175Q8N4F7 328 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 OR2T4Q8NH00 348 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 PGAP3Q96FM1 320 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-209ENST00000438120 OR5B2Q96R09 309 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 CRB3Q9BUF7 120 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 CA5BQ9Y2D0 317 aa16.27■□□□□ 0.19
PTPRF-209ENST00000438120 PRKXP51817 358 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 KDELC1Q6UW63 502 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 SYT14Q8NB59 555 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 MYRFLQ96LU7 910 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 KNDC1Q76NI1 1749 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 BMP1P13497 986 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 ITGB8P26012 769 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 UGT2A3Q6UWM9 527 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PARS2Q7L3T8 475 aaKnown RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 ZMYND19Q96E35 227 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 COL2A1P02458 1487 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 UCHL1P09936 223 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TMEM225BP0DP42 221 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 CTSCP53634 463 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 MS4A2Q01362 244 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TLE3Q04726 772 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 SNTB2Q13425 540 aaKnown RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TP53I3Q53FA7 332 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PRR18Q8N4B5 295 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 KDM1BQ8NB78 822 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 FAM46BQ96A09 425 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TOE1Q96GM8 510 aaKnown RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TMEM68Q96MH6 324 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 KLF16Q9BXK1 252 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-209ENST00000438120 SLC46A2Q9BY10 475 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 MLC1Q15049 377 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 EMC10Q5UCC4 262 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 TRIM46Q7Z4K8 759 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 OR52E1Q8NGJ3 308 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 DMRT3Q9NQL9 472 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PPP6CO00743 305 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PVRP15151 417 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PSMB5P28074 263 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PITPNBP48739 271 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 BMXP51813 675 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 RAB11BQ15907 218 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PRAMEF8Q5VWM4 474 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 PRAMEF7Q5VXH5 474 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 LCN8Q6JVE9 175 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 MARVELD2Q8N4S9 558 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 ARFGAP1Q8N6T3 406 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 SYNPO2LQ9H987 977 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 CSNK1G3Q9Y6M4 447 aa16.26■□□□□ 0.19
PTPRF-209ENST00000438120 DNAJC25-GNG10A0A024R161 153 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 ETV4P43268 484 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 TMEM173Q86WV6 379 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 MAB21L2Q9Y586 359 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 SOBPA7XYQ1 873 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 COL28A1Q2UY09 1125 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 TRAPPC6BQ86SZ2 158 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 SLC39A11Q8N1S5 342 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 OR5AK2Q8NH90 309 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 RTP4Q96DX8 246 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 MS4A4EQ96PG1 132 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 CD207Q9UJ71 328 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 TRIM64BA6NI03 449 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 PRLP01236 227 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF765Q7L2R6 523 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 MFSD6LQ8IWD5 586 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 DTWD1Q8N5C7 304 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 FGF13Q92913 245 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 ENPP4Q9Y6X5 453 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 OTOL1A6NHN0 477 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 NR4A2P43354 598 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms