RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 VAPAQ9P0L0 249 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 TINAGQ9UJW2 476 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 AP3M1Q9Y2T2 418 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 A0A1W2PS29 197 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 CFAP73A6NFT4 308 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 EVPLLA8MZ36 301 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MAN1A2O60476 641 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SLC19A2O60779 497 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 DNAJA2O60884 412 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 KRT75O95678 551 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 CYC1P08574 325 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SLC35E2P0CK97 266 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ICAM2P13598 275 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 COX6B1P14854 86 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 PGM1P36871 562 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MC3RP41968 323 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 STT3AP46977 705 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MTPNP58546 118 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 IGLV3-21P80748 117 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 RHAGQ02094 409 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 DUSP2Q05923 314 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 BIKQ13323 160 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 TP53BP2Q13625 1128 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SAMD4BQ5PRF9 694 aaKnown RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 FCRLBQ6BAA4 426 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MTFR2Q6P444 385 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 DLEU7Q6UYE1 221 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 RPTNQ6XPR3 784 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ASRGL1Q7L266 308 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 CPEB2Q7Z5Q1 589 aaKnown RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MSRB3Q8IXL7 192 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 BEST3Q8N1M1 668 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 VWA5B2Q8N398 1253 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MDS2Q8NDY4 140 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF675Q8TD23 568 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 TSLPQ969D9 159 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 AURKBQ96GD4 344 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SLC35G5Q96KT7 338 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ANKRD27Q96NW4 1050 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MS4A4EQ96PG1 132 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 GPATCH1Q9BRR8 931 aaKnown RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 THTPAQ9BU02 230 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 C3orf14Q9HBI5 128 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SIRT3Q9NTG7 399 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ZCCHC3Q9NUD5 404 aaKnown RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SLC25A37Q9NYZ2 338 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 SLAMF8Q9P0V8 285 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 C19orf25Q9UFG5 118 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF835Q9Y2P0 537 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 PCDHB14Q9Y5E9 798 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 VPS13CQ709C8 3753 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 MTORP42345 2549 aa11.24□□□□□ -0.61
PTPRF-208ENST00000437607 ITPR3Q14573 2671 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 IGKV3D-11A0A0A0MRZ8 115 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 TRBV5-3A0A0A0MS03 114 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 MYOCOSA0A1B0GUC4 107 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 A8MUI8 341 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ZNHIT1O43257 154 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 COQ9O75208 318 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 CIB2O75838 187 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 IFI6P09912 130 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 HOXB9P17482 250 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 SLC6A2P23975 617 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PTPN6P29350 595 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PTGER1P34995 402 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ANXA11P50995 505 aaKnown RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 RIPPLY3P57055 190 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 KRTAP10-9P60411 292 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 AP2B1P63010 937 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 BTG2P78543 158 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 TUBA3CQ13748 450 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 CYP51A1Q16850 503 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.23□□□□□ -0.611e-7■□□□□ 10.7
PTPRF-208ENST00000437607 RABL3Q5HYI8 236 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PLAG1Q6DJT9 500 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 C8orf82Q6P1X6 216 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 TUBA3EQ6PEY2 450 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 XKRXQ6PP77 449 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 Q6ZPB1 254 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 NCCRP1Q6ZVX7 275 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ADCY4Q8NFM4 1077 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PSMA8Q8TAA3 256 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PNPT1Q8TCS8 783 aaKnown RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 METTL21AQ8WXB1 218 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 CCDC124Q96CT7 223 aaKnown RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 SCMH1Q96GD3 660 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 RBM18Q96H35 190 aaKnown RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 MAGED4Q96JG8 741 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 THUMPD3Q9BV44 507 aaKnown RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ALOXE3Q9BYJ1 711 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 TSPAN10Q9H1Z9 355 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 MMADHCQ9H3L0 296 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-208ENST00000437607 TPT1P8Q9HAU6 139 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ADAP2Q9NPF8 381 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 NECTIN3Q9NQS3 549 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 SLC6A13Q9NSD5 602 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ABCD2Q9UBJ2 740 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 PCDHGB6Q9Y5F9 930 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 ARHGAP21Q5T5U3 1957 aa11.23□□□□□ -0.61
PTPRF-208ENST00000437607 HRNRQ86YZ3 2850 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms