RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ATXN1LP0C7T5 689 aaKnown RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 BPIP17213 487 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CR2P20023 1033 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 HRH2P25021 359 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 NAGLUP54802 743 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 FOXRED2Q8IWF2 684 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 PIH1D2Q8WWB5 315 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 RERGLQ9H628 205 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 MVB12BQ9H7P6 319 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 C11orf16Q9NQ32 467 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CXorf49A8MYA2 514 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 LYRM1O43325 122 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 GKP32189 559 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 GRK5P34947 590 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 GPX4P36969 197 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 MAGEA3P43357 314 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 DUSP3P51452 185 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 EIF4EBP2Q13542 120 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 GANABQ14697 944 aaKnown RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 OPCMLQ14982 345 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 HFEQ30201 348 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ADIPOR2Q86V24 386 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 RHEBL1Q8TAI7 183 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP54-205ENST00000424265 OCSTAMPQ9BR26 566 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 C7orf50Q9BRJ6 194 aaKnown RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 EDEM2Q9BV94 578 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 C3orf14Q9HBI5 128 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ACOT13Q9NPJ3 140 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 GPR34Q9UPC5 381 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CCDC163A0A0D9SF12 145 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CLDN4O14493 209 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FFAR3O14843 346 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 GPR42O15529 346 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 HCN1O60741 890 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SLC43A1O75387 559 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 PRKCGP05129 697 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 HNRNPKP61978 463 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP54-205ENST00000424265 ZNHIT3Q15649 155 aaPredicted RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 PABPC1L2AQ5JQF8 200 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 NLRP8Q86W28 1048 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CENPLQ8N0S6 344 aaPredicted RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 ALOXE3Q9BYJ1 711 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FAM86C1Q9NVL1 165 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SLC13A4Q9UKG4 626 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 TRAPPC4Q9Y296 219 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SAMHD1Q9Y3Z3 626 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 AUP1Q9Y679 476 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FAM74A7A6NL05 159 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 EFCAB7A8K855 629 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 S1PR4O95977 384 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 HGFP14210 728 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 TGFBR2P37173 567 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 KIAA1024LP59773 190 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LCP2Q13094 533 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FAM74A3Q4VXF1 159 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LCN8Q6JVE9 175 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SMIM15Q7Z3B0 74 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 TIPARPQ7Z3E1 657 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 SIDT2Q8NBJ9 832 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 MAGEL2Q9UJ55 1249 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 RNF215Q9Y6U7 377 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ZCWPW2A0A1B0GU75 182 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 D6RAR5 112 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CCL22O00626 93 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 AZIN1O14977 448 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LDB2O43679 373 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FADS1O60427 444 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SDC3O75056 442 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SYPP08247 313 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 RAP2AP10114 183 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ACTR1BP42025 376 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ACTR1AP61163 376 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CDK5R2Q13319 367 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LARS2Q15031 903 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 FCN2Q15485 313 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 UGT8Q16880 541 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LBHQ53QV2 105 aaPredicted RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 LRRC73Q5JTD7 316 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ZNF605Q86T29 641 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ASPGQ86U10 573 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 TGIF2LXQ8IUE1 241 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 PAPD5Q8NDF8 572 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 RERGQ96A58 199 aaPredicted RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 SUCNR1Q9BXA5 334 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 GPR174Q9BXC1 333 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ANKRA2Q9H9E1 313 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 TBC1D17Q9HA65 648 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ASGR2P07307 311 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 FHP07954 510 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 GCGRP47871 477 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CRYZQ08257 329 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 ACSM2AQ08AH3 577 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ACSM2BQ68CK6 577 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 MIER2Q8N344 545 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 LCN9Q8WX39 176 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 SLC38A2Q96QD8 506 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 ZNF385DQ9H6B1 395 aa9.27□□□□□ -0.93
USP54-205ENST00000424265 CCDC86Q9H6F5 360 aaKnown RBP9.27□□□□□ -0.93
USP54-205ENST00000424265 KCTD3Q9Y597 815 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms