RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 REV1Q9UBZ9 1251 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 PCDHGA4Q9Y5G9 962 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 KLK4Q9Y5K2 254 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 SYT5O00445 386 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 HAT1O14929 419 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 ERI3O43414 337 aaKnown RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 ASNA1O43681 348 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 STSP08842 583 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 HOXB3P14651 431 aaPredicted RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 CSNK2A2P19784 350 aaPredicted RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 ACP1P24666 158 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 C21orf33P30042 268 aaPredicted RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 IDUAP35475 653 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 LIPAP38571 399 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 RANBP1P43487 201 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 SLC15A1P46059 708 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 NCS1P62166 190 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 TARDBPQ13148 414 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP4-203ENST00000415188 CEBPEQ15744 281 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 RNLSQ5VYX0 342 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 NIPAL1Q6NVV3 410 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 MFSD4AQ8N468 514 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 AMER3Q8N944 861 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 ACOT4Q8N9L9 421 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 PINK1Q9BXM7 581 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 ROGDIQ9GZN7 287 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 SLIRPQ9GZT3 109 aaKnown RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 DCSTAMPQ9H295 470 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 GPR83Q9NYM4 423 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 TRPC4Q9UBN4 977 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 KLF15Q9UIH9 416 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 PCDHGA3Q9Y5H0 932 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 TDRD6O60522 2096 aaKnown RBP13.88□□□□□ -0.19
USP4-203ENST00000415188 CACNA1GO43497 2377 aa13.88□□□□□ -0.19
USP4-203ENST00000415188 EMC8O43402 210 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 OR10H3O60404 316 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 XKP51811 444 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 RPS15AP62244 130 aaKnown RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 PRR5P85299 388 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 DAB2P98082 770 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 INSM1Q01101 510 aaPredicted RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 ITGADQ13349 1161 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SYPL1Q16563 259 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 COL28A1Q2UY09 1125 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PLAG1Q6DJT9 500 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 FAM180BQ6P0A1 224 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SLC48A1Q6P1K1 146 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PGBD2Q6P3X8 592 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 DEF8Q6ZN54 512 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SAMD14Q8IZD0 417 aaPredicted RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 AMER2Q8N7J2 671 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 B3GNT7Q8NFL0 401 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 XAGE5Q8WWM1 108 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 GAL3ST3Q96A11 431 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SLC22A18Q96BI1 424 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PRRC1Q96M27 445 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 MROQ9BYG7 248 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 KLHL31Q9H511 634 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 TRIM45Q9H8W5 580 aaPredicted RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 C3orf14Q9HBI5 128 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SLC25A19Q9HC21 320 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PRDM9Q9NQV7 894 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 MOSPD1Q9UJG1 213 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 CES1P1Q9UKY3 287 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 LIPT1Q9Y234 373 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 ITPR1Q14643 2758 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 NINQ8N4C6 2090 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SPTY2D1-AS1A0A0U1RR47 76 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 A0A1W2PR48 441 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PRSS38A1L453 326 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 AIFM1O95831 613 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 LGI1O95970 557 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 ALOX5P09917 674 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 F3P13726 295 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 POU2F1P14859 743 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 GSTM3P21266 225 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 GADD45AP24522 165 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 CD40LGP29965 261 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 ALDH4A1P30038 563 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PEBP1P30086 187 aaKnown RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 RABIFP47224 123 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 NUDT6P53370 316 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 LSM3P62310 102 aaKnown RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 RHAGQ02094 409 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 RGS1Q08116 209 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 INAQ16352 499 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 OCLNQ16625 522 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 ZNF404Q494X3 552 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 ARMCX4Q5H9R4 360 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 SLC25A30Q5SVS4 291 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 CASP12Q6UXS9 341 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PAQR7Q86WK9 346 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 NRROSQ86YC3 692 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 OR8J1Q8NGP2 316 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 MCFD2Q8NI22 146 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 FAM174AQ8TBP5 190 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 NT5CQ8TCD5 201 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 FNDC11Q9BVV2 318 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 NXF2Q9GZY0 626 aaKnown RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 POLR2J3Q9H1A7 115 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms