RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 NPSR1Q6W5P4 371 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 FRMD7Q6ZUT3 714 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 SLC44A2Q8IWA5 706 aaPredicted RBP13.4□□□□□ -0.26
CBX3-203ENST00000409747 TRIM42Q8IWZ5 723 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 C9orf106Q8NAJ2 232 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 OR7G2Q8NG99 324 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 RDH11Q8TC12 318 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 SFXN2Q96NB2 322 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 UCN2Q96RP3 112 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 FOXC2Q99958 501 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 TUBA1CQ9BQE3 449 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 ANKRA2Q9H9E1 313 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 MYNNQ9NPC7 610 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 ST6GALNAC2Q9UJ37 374 aa13.4□□□□□ -0.26
CBX3-203ENST00000409747 SPG11Q96JI7 2443 aa13.4□□□□□ -0.27
CBX3-203ENST00000409747 MYO1GB0I1T2 1018 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 G3V2L1 256 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 RSL1D1O76021 490 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 GRK2P25098 689 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 NCBP2P52298 156 aaKnown RBP eCLIP13.39□□□□□ -0.27
CBX3-203ENST00000409747 IST1P53990 364 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 CYP27C1Q4G0S4 372 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 FBXW10Q5XX13 1052 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 IKBIPQ70UQ0 350 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 TRIM46Q7Z4K8 759 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 EIF1ADQ8N9N8 165 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 CHDHQ8NE62 594 aaPredicted RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 RNF138Q8WVD3 245 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 WNT2BQ93097 391 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 METTL2AQ96IZ6 378 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 RRAGDQ9NQL2 400 aaPredicted RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 TAS2R7Q9NYW3 318 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 JKAMPQ9P055 326 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 MRTO4Q9UKD2 239 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 EMCNQ9ULC0 261 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 CBLCQ9ULV8 474 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 DOCK7Q96N67 2140 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 UBFD1O14562 309 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 RCBTB2O95199 551 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 JUNP05412 331 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 EVI2BP34910 448 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 FOXA1P55317 472 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 DNAJB13P59910 316 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 SRYQ05066 204 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 GAB1Q13480 694 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 DAZAP2Q15038 168 aaPredicted RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 ZNHIT3Q15649 155 aaPredicted RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 ADGRE4PQ86SQ3 457 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 OR4K17Q8NGC6 315 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 NRGNQ92686 78 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 EFHD2Q96C19 240 aaPredicted RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 PIGMQ9H3S5 423 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 SDHAF3Q9NRP4 125 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 DDX18Q9NVP1 670 aaKnown RBP13.39□□□□□ -0.27
CBX3-203ENST00000409747 PPP4R1LQ9P1A2 415 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 FBXL2Q9UKC9 423 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 ABCG2Q9UNQ0 655 aa13.39□□□□□ -0.27
CBX3-203ENST00000409747 KIAA1549Q9HCM3 1950 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 CLCA1A8K7I4 914 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 PLOD2O00469 737 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 PROCP04070 461 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 EPXP11678 715 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 DNASE1P24855 282 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 DPP4P27487 766 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 MC3RP41968 323 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 CPA2P48052 419 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 CLK3P49761 638 aaKnown RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 LHX2P50458 406 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 PSMD4P55036 377 aaKnown RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 DSCR4P56555 118 aaPredicted RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 PSG6Q00889 435 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 GANABQ14697 944 aaKnown RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 DECR1Q16698 335 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 SH2D4BQ5SQS7 431 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 FAM71E1Q6IPT2 247 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 TMEM107Q6UX40 140 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 HOMEZQ8IX15 550 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 CCDC63Q8NA47 563 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.38□□□□□ -0.279e-18■■■■□ 21.8
CBX3-203ENST00000409747 CXXC4Q9H2H0 198 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 Q9N2J8 555 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 MID2Q9UJV3 735 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 C19orf53Q9UNZ5 99 aaPredicted RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 POLR3HQ9Y535 204 aaPredicted RBP13.38□□□□□ -0.27
CBX3-203ENST00000409747 MED13LQ71F56 2210 aa13.38□□□□□ -0.27
CBX3-203ENST00000409747 HRNRQ86YZ3 2850 aaPredicted RBP13.37□□□□□ -0.27
CBX3-203ENST00000409747 A0A1W2PPM1 405 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 TTC36A6NLP5 189 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 PLIN3O60664 434 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 IFI6P09912 130 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 UROSP10746 265 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 ZNF708P17019 499 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 CRHR1P34998 444 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 SLCO1A2P46721 670 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 AGFG1P52594 562 aaKnown RBP13.37□□□□□ -0.27
CBX3-203ENST00000409747 GAS1P54826 345 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 DIO3P55073 304 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 BCL2A1Q16548 175 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 NOXRED1Q6NXP6 359 aa13.37□□□□□ -0.27
CBX3-203ENST00000409747 CHMP1BQ7LBR1 199 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms