RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SEMA7AO75326 666 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 SNAP29O95721 258 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 AK1P00568 194 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 HBQ1P09105 142 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 ZGLP1P0C6A0 271 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 FUT4P22083 530 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 DCDP81605 110 aaKnown RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 CCDC157Q569K6 752 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF311Q5JNZ3 666 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 LCN10Q6JVE6 187 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 FIGNL1Q6PIW4 674 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 BPHLQ86WA6 291 aaPredicted RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 CHERPQ8IWX8 916 aaKnown RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 C16orf52Q8NHV5 167 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 RMND5BQ96G75 393 aaPredicted RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 PIP5K1AQ99755 562 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 RBM4BQ9BQ04 359 aaKnown RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 ADI1Q9BV57 179 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 RBM4Q9BWF3 364 aaKnown RBP13.06□□□□□ -0.32
GPNMB-203ENST00000409458 ITPAQ9BY32 194 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 PARD6AQ9NPB6 346 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 CHST2Q9Y4C5 530 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 PCDHGB3Q9Y5G1 929 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 SEC16AO15027 2179 aa13.06□□□□□ -0.32
GPNMB-203ENST00000409458 TNFRSF11BO00300 401 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 POLR1CO15160 346 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 KIAA0513O60268 411 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 CPNE3O75131 537 aaKnown RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 STX11O75558 287 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 KCNK2O95069 426 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 DDAH2O95865 285 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 LGI1O95970 557 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF28P17035 718 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 RHCEP18577 417 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 CCKBRP32239 447 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 CDH12P55289 794 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 MC2RQ01718 297 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 GK3PQ14409 553 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 GANABQ14697 944 aaKnown RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNHIT3Q15649 155 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ELAVL1Q15717 326 aaKnown RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NSDHLQ15738 373 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 GPR68Q15743 365 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NNATQ16517 81 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 DEF8Q6ZN54 512 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 LANCL3Q6ZV70 420 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZAR1Q86SH2 424 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF619Q8N2I2 560 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 MARVELD2Q8N4S9 558 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR7G1Q8NGA0 311 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR4N2Q8NGD1 307 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR4C15Q8NGM1 316 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR52P1PQ8NH57 321 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 TFAP2CQ92754 450 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 SENP5Q96HI0 755 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 FBXL20Q96IG2 436 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 CNBD2Q96M20 576 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 SOX17Q9H6I2 414 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PDP1Q9P0J1 537 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 KCND3Q9UK17 655 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF443Q9Y2A4 671 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PCDHGB5Q9Y5G0 923 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 WDR87Q6ZQQ6 2873 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NPIPA5A0A0B4J1W7 369 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 C4orf47A7E2U8 309 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NPIPA7E9PJI5 369 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 FFAR1O14842 300 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 HS6ST1O60243 411 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ONECUT2O95948 504 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NPIPA8P0DM63 369 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 THRBP10828 461 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 RPS4Y1P22090 263 aaKnown RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PRKAR1BP31321 381 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 CLDN6P56747 220 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 SLC37A1P57057 533 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OCA2Q04671 838 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 MERTKQ12866 999 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PDK3Q15120 406 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZIK1Q3SY52 487 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 TCTN3Q6NUS6 607 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 DHRS4L2Q6PKH6 230 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF836Q6ZNA1 936 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PLPP5Q8NEB5 264 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR6T1Q8NGN1 323 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR52J3Q8NH60 311 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 SLC2A12Q8TD20 617 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF721Q8TF20 911 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NRBF2Q96F24 287 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 ARHGDIGQ99819 225 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 OR8D2Q9GZM6 311 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 SAP130Q9H0E3 1048 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 C14orf105Q9NVL8 296 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 UBAP1Q9NZ09 502 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 RHCGQ9UBD6 479 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 TMEFF2Q9UIK5 374 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 GPR55Q9Y2T6 319 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 FAM32AQ9Y421 112 aaKnown RBP13.05□□□□□ -0.32
GPNMB-203ENST00000409458 PCDHGA8Q9Y5G5 932 aa13.05□□□□□ -0.32
GPNMB-203ENST00000409458 NINQ8N4C6 2090 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 AGAP5A6NIR3 686 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms