RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FOLR3P41439 243 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 CRATP43155 626 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 EFNA3P52797 238 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 TPD52P55327 224 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 RPS18P62269 152 aaKnown RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 RHAGQ02094 409 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ID2Q02363 134 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 KCNAB2Q13303 367 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 DYNC1I2Q13409 638 aaKnown RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 NSDHLQ15738 373 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF630Q2M218 657 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF773Q6PK81 442 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 QSOX2Q6ZRP7 698 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 VASH2Q86V25 355 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 HS3ST5Q8IZT8 346 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 PLPP5Q8NEB5 264 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 OR4K14Q8NGD5 310 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 SNIP1Q8TAD8 396 aaKnown RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 KCNE4Q8WWG9 221 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 OR5P2Q8WZ92 322 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 CIDECQ96AQ7 238 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ANKRD9Q96BM1 317 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 EPYCQ99645 322 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 TUBA1CQ9BQE3 449 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 DOHHQ9BU89 302 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 CRB3Q9BUF7 120 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 AMBRA1Q9C0C7 1298 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 NECTIN3Q9NQS3 549 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 VNN3Q9NY84 501 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 TAS2R7Q9NYW3 318 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 EHD3Q9NZN3 535 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 BLOC1S6Q9UL45 172 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ABCG2Q9UNQ0 655 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 MMACHCQ9Y4U1 282 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 PCDHGA6Q9Y5G7 932 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 LOC100130705A0A1B0GUX0 176 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 H3BSA7 217 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 KLK10O43240 276 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 FGF17O60258 216 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 UGT2B11O75310 529 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 IFNA14P01570 189 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 UMODP07911 640 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 NUDT7P0C024 238 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 LIFP15018 202 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ETS2P15036 469 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 IGFBP5P24593 272 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 PPP2R1BP30154 601 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 RYKP34925 604 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 CHI3L1P36222 383 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 XKP51811 444 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 SELENOWP63302 87 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 VLDLRP98155 873 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 STX4Q12846 297 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 SSPNQ14714 243 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 PRSS53Q2L4Q9 553 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF691Q5VV52 312 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 FAAH2Q6GMR7 532 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 FAM180BQ6P0A1 224 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 VTCN1Q7Z7D3 282 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 SETD9Q8NE22 299 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 METTL21AQ8WXB1 218 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 EXOSC8Q96B26 276 aaKnown RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 C7orf34Q96L11 122 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 ALOXE3Q9BYJ1 711 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 EPS8L2Q9H6S3 715 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 REEP1Q9H902 201 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 GPATCH2Q9NW75 528 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 CLDN16Q9Y5I7 305 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 MRPS18BQ9Y676 258 aaKnown RBP12.51□□□□□ -0.41
LIMS1-204ENST00000409441 HSPE1-MOB4S4R3N1 261 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 TGFBR3LH3BV60 316 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 hCG_2039718K7EN88 272 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ALOX12BO75342 701 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ERAL1O75616 437 aaKnown RBP12.5□□□□□ -0.41
LIMS1-204ENST00000409441 C8orf89P0DMQ9 161 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ARAFP10398 606 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ETFAP13804 333 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 JUNBP17275 347 aaPredicted RBP12.5□□□□□ -0.41
LIMS1-204ENST00000409441 KCNJ10P78508 379 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 SCARB2Q14108 478 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 KEAP1Q14145 624 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 IQCCQ4KMZ1 466 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 BROXQ5VW32 411 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 KDM4DQ6B0I6 523 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ANGPTL8Q6UXH0 198 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 PIK3C3Q8NEB9 887 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 OR10Q1Q8NGQ4 319 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 FBLIM1Q8WUP2 373 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 LZICQ8WZA0 190 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 TSLPQ969D9 159 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF347Q96SE7 839 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 DPH1Q9BZG8 443 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 SLC24A3Q9HC58 644 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 NEUROD4Q9HD90 331 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 SLC35C2Q9NQQ7 365 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 SEMA3GQ9NS98 782 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF780BQ9Y6R6 833 aa12.5□□□□□ -0.41
LIMS1-204ENST00000409441 IGKV3D-11A0A0A0MRZ8 115 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 C1QTNF9BB2RNN3 333 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 PDPK1O15530 556 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms