RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KCND3Q9UK17 655 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 B3GNT3Q9Y2A9 372 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 TRIOBPQ9H2D6 2365 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 A6NIZ1 184 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SLC9B1P1A6NJY1 282 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FAM159BA6NKW6 160 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CD300LBA8K4G0 201 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CENPBD1B2RD01 187 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 LGALS8O00214 317 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FOXE1O00358 373 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 PIRO00625 290 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SURF4O15260 269 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SIGLEC6O43699 453 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ENSAO43768 121 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 RDH16O75452 317 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 GABRR1P24046 479 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CD6P30203 668 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TSFMP43897 325 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 GPR4P46093 362 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 RAP1BP61224 184 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 RAP1AP62834 184 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ZNF404Q494X3 552 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 MS4A15Q8N5U1 240 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CDRT4Q8N9R6 151 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 IL17RDQ8NFM7 739 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR14K1Q8NGZ2 314 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CNOT9Q92600 299 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 HDAC2Q92769 488 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 IGSF8Q969P0 613 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ZNF681Q96N22 645 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 PIP5K1AQ99755 562 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR10A5Q9H207 317 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR10A2Q9H208 303 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 LINC00597Q9H2U6 94 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 POT1Q9NUX5 634 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ACSL6Q9UKU0 697 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 MAGED1Q9Y5V3 778 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 CASZ1Q86V15 1759 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DIP2BQ9P265 1576 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CDC14CA4D256 554 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TRAPPC13A5PLN9 417 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR52A4PA6NMU1 304 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CXorf49A8MYA2 514 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 M0R233 179 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ATP6V1G1O75348 118 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CRTAPO75718 401 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 KNG1P01042 644 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 NPPAP01160 153 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 MMP2P08253 660 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TMEM11P17152 192 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SLC2A5P22732 501 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CDK2P24941 298 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DNAJB1P25685 340 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DIO3P55073 304 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SIRPAP78324 504 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ZNF92Q03936 586 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FGL1Q08830 312 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TXNRD3NBQ6F5E7 133 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CFAP77Q6ZQR2 320 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SMIM15Q7Z3B0 74 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SYT14Q8NB59 555 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 HUS1BQ8NHY5 278 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FIBINQ8TAL6 211 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TAAR8Q969N4 342 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CDC6Q99741 560 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TUBA1CQ9BQE3 449 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 C19orf12Q9NSK7 152 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CUEDC1Q9NWM3 386 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 SIDT1Q9NXL6 827 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR14J1Q9UGF5 321 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DUSP13Q9UII6 198 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SLC6A14Q9UN76 642 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 A0A0J9YY10 115 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FAM230AA0A1W2PPH8 454 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TCRBV7S3A2A0A539 114 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ITM2AO43736 263 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OPN1LWP04000 364 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 EDN1P05305 212 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 CD70P32970 193 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 KDELR2P33947 212 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DAP3P51398 398 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 RRAS2P62070 204 aaPredicted RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 INCA1Q0VD86 236 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 RPA4Q13156 261 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 SNTB2Q13425 540 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 HES1Q14469 280 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 XKR5Q6UX68 686 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 TMEM184AQ6ZMB5 413 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 APCDD1Q8J025 514 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 VWA5B2Q8N398 1253 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ZADH2Q8N4Q0 377 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 KDM1BQ8NB78 822 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OR51T1Q8NGJ9 327 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 FGF13Q92913 245 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 DAZAP1Q96EP5 407 aaKnown RBP6.82□□□□□ -1.32
UPF2-203ENST00000397053 RTP3Q9BQQ7 232 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 ULBP2Q9BZM5 246 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 OPA3Q9H6K4 179 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 APMAPQ9HDC9 416 aa6.82□□□□□ -1.32
UPF2-203ENST00000397053 MEPEQ9NQ76 525 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms