RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SNPHO15079 494 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 OR10H2O60403 315 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 SNX4O95219 450 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 HPNP05981 417 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 HNRNPCL4P0DMR1 293 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 NT5EP21589 574 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 CALB2P22676 271 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 HTR1EP28566 365 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 ARL1P40616 181 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-202ENST00000394943 PCYT1AP49585 367 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 ANXA11P50995 505 aaKnown RBP6.45□□□□□ -1.38
LIMA1-202ENST00000394943 CRYBA2P53672 197 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 FGFBP1Q14512 234 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 COL28A1Q2UY09 1125 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 MINDY4Q4G0A6 757 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 AGKQ53H12 422 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 BHLHE22Q8NFJ8 381 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-202ENST00000394943 COL21A1Q96P44 957 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 SH3GL1Q99961 368 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 SLC35A5Q9BS91 424 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 SLC38A1Q9H2H9 487 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 ACKR4Q9NPB9 350 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 NCKAP5O14513 1909 aa6.45□□□□□ -1.38
LIMA1-202ENST00000394943 IGHV3-20A0A0C4DH32 117 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 RFXANKO14593 260 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SH3BGRLO75368 114 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ITGA10O75578 1167 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CDC123O75794 336 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 LRATO95237 230 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 HMGN2P05204 90 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 EEF1A1P68104 462 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF267Q14586 743 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF630Q2M218 657 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 DEFB109BQ30KR1 87 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 BTBD16Q32M84 506 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ERICH5Q6P6B1 374 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CPLX4Q7Z7G2 160 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 HORMAD2Q8N7B1 307 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 BBS10Q8TAM1 723 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 TM9SF4Q92544 642 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SLC7A6OSQ96CW6 309 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF583Q96ND8 569 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 IKZF5Q9H5V7 419 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 GORASP2Q9H8Y8 452 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 TPT1P8Q9HAU6 139 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CALML5Q9NZT1 146 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 MRTO4Q9UKD2 239 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CHST2Q9Y4C5 530 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 RNF103-CHMP3A0A140T963 221 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ARGFXA6NJG6 315 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 LRRC3CA6NJW4 275 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SYT5O00445 386 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 UNC5CO95185 931 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SP1P08047 785 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 MATN1P21941 496 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 MSX1P28360 303 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CD96P40200 585 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PPM1FP49593 454 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 TMED10P49755 219 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 GANABQ14697 944 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 C6orf163Q5TEZ5 329 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 NANOGP8Q6NSW7 305 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SHISA6Q6ZSJ9 500 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 DHDDSQ86SQ9 333 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PACS2Q86VP3 889 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CHERPQ8IWX8 916 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 BEST3Q8N1M1 668 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 C10orf111Q8N326 155 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PHF10Q8WUB8 498 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 SLC35G5Q96KT7 338 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 LRRC37BQ96QE4 947 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 NANOGQ9H9S0 305 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 GID8Q9NWU2 228 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 KCNE5Q9UJ90 142 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PRPF19Q9UMS4 504 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 LHX6Q9UPM6 363 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 MKRN2OSH3BPM6 223 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 AKAP10O43572 662 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 FMO6PO60774 539 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ATP5HO75947 161 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ALOX5P09917 674 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF17P17021 662 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 HOXB6P17509 224 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PSMA4P25789 261 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PRKAR1BP31321 381 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PGM1P36871 562 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PGDP52209 483 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CXADRP78310 365 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 GNA13Q14344 377 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 EXOSC7Q15024 291 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF239Q16600 458 aaKnown RBP6.44□□□□□ -1.38
LIMA1-202ENST00000394943 TRPM8Q7Z2W7 1104 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 PCYOX1LQ8NBM8 494 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 OMA1Q96E52 524 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 MARK4Q96L34 752 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 RNF145Q96MT1 663 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 DEFB126Q9BYW3 111 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CDCP1Q9H5V8 836 aa6.44□□□□□ -1.38
LIMA1-202ENST00000394943 CMTM6Q9NX76 183 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms