RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CD300CQ08708 224 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 DMPKQ09013 629 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CLEC12AQ5QGZ9 265 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 RAET1LQ5VY80 246 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PIWIL3Q7Z3Z3 882 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 FUNDC1Q8IVP5 155 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 POMGNT2Q8NAT1 580 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 MFSD9Q8NBP5 474 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 OR1L3Q8NH93 324 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 RORBQ92753 470 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 MS4A8Q9BY19 250 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 A0A1B0GX78 115 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 H3BML4 177 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ACOX3O15254 700 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 P2RX6O15547 441 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 IDUAP35475 653 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 KHKP50053 298 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ADARB1P78563 741 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 DPY19L1Q2PZI1 675 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 FBXO42Q6P3S6 717 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 C6orf15Q6UXA7 325 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CADM3Q8N126 398 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 FAM122AQ96E09 287 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 TEX37Q96LM6 180 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PRRX2Q99811 253 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PCED1AQ9H1Q7 454 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 POMT2Q9UKY4 750 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF451Q9Y4E5 1061 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 EPG5Q9HCE0 2579 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 DUXAA6NLW8 204 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ASNA1O43681 348 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 UGT2B17O75795 530 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 DLGAP3O95886 979 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CSTAP01040 98 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CTSBP07858 339 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CPMP14384 443 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PIK3CBP42338 1070 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 TRPC1P48995 793 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ALDH3A2P51648 485 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 LSM3P62310 102 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 HBA1P69905 142 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 GALNT1Q10472 559 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 SPCS2Q15005 226 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 AKAP14Q86UN6 197 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 NLRP8Q86W28 1048 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 EID3Q8N140 333 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CREB3L4Q8TEY5 395 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 HDAC2Q92769 488 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ZIM2Q9NZV7 527 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ABCD2Q9UBJ2 740 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 RPS6KA6Q9UK32 745 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ANKRD11Q6UB99 2663 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PDCD11Q14690 1871 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 IFNW1P05000 195 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PPIBP23284 216 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 POLR2IP36954 125 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CLDN8P56748 225 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 EEFSECP57772 596 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 POU6F2P78424 691 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 AGAP7PQ5VUJ5 663 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 LANCL3Q6ZV70 420 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 SLC47A1Q96FL8 570 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 LINC00615Q96LM1 132 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 NODALQ96S42 347 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 CSF3RQ99062 836 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 NEUROD4Q9HD90 331 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 P2RX2Q9UBL9 471 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 SCAMP2O15127 329 aaKnown RBP9.65□□□□□ -0.86
COL6A3-205ENST00000392004 ERN1O75460 977 aaKnown RBP9.65□□□□□ -0.86
COL6A3-205ENST00000392004 GPR75O95800 540 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 KCNC4Q03721 635 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 TRMT12Q53H54 448 aaKnown RBP9.65□□□□□ -0.86
COL6A3-205ENST00000392004 COMMD2Q86X83 199 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 SPARTQ8N0X7 666 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 DNASE2BQ8WZ79 361 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 MS4A6EQ96DS6 147 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 SENP5Q96HI0 755 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-205ENST00000392004 EXOSC4Q9NPD3 245 aaKnown RBP9.65□□□□□ -0.86
COL6A3-205ENST00000392004 PCDHB14Q9Y5E9 798 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 MED13LQ71F56 2210 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 NOBOXO60393 691 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 KRT8P05787 483 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 NUDT7P0C024 238 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 HSMCR30P0CW71 290 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 CD22P20273 847 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 RORAP35398 523 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 AHRP35869 848 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 LAPTM4BQ86VI4 370 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 SLC22A16Q86VW1 577 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 PSMA8Q8TAA3 256 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 TMBIM1Q969X1 311 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 STMN3Q9NZ72 180 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 VAPAQ9P0L0 249 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 MAGEL2Q9UJ55 1249 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 MAN2B2Q9Y2E5 1009 aa9.65□□□□□ -0.86
COL6A3-205ENST00000392004 A0A1W2PR48 441 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 TRABD2BA6NFA1 517 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF99A8MXY4 864 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-205ENST00000392004 D6RAR5 112 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 G3V2T6 193 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms