RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 ADAD1Q96M93 576 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TUBA1CQ9BQE3 449 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 DUSP23Q9BVJ7 150 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 POLDIP3Q9BY77 421 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 COMMD4Q9H0A8 199 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 IKZF5Q9H5V7 419 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TRIM36Q9NQ86 728 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GRHPRQ9UBQ7 328 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 AASSQ9UDR5 926 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TMPRSS11DO60235 418 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 RPP14O95059 124 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 CELP19835 753 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SLC3A1Q07837 685 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SLC48A1Q6P1K1 146 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 KLHL17Q6TDP4 642 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TMIGD2Q96BF3 282 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SECISBP2Q96T21 854 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF559Q9BR84 538 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 QRSL1Q9H0R6 528 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ANKRA2Q9H9E1 313 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 C1GALT1Q9NS00 363 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 C11orf98E9PRG8 122 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 CCRL2O00421 344 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TBX1O43435 398 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GREM1O60565 184 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 HLA-DPB1P04440 258 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 DCKP27707 260 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 OMPP47874 163 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GABARAPL2P60520 117 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TIAL1Q01085 375 aaKnown RBP eCLIP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 MEX3DQ86XN8 651 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF676Q8N7Q3 588 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 C11orf24Q96F05 449 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 NEK6Q9HC98 313 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TAS2R7Q9NYW3 318 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SLC17A4Q9Y2C5 497 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GPR52Q9Y2T5 361 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF638Q14966 1978 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 CCDC182A6NF36 153 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 MRPL3P09001 348 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF41P51814 821 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 TMBIM6P55061 237 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 RPL13AP3Q6NVV1 102 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PRRC1Q96M27 445 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 TTTY10Q9BZA0 68 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SPNS1Q9H2V7 528 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SEMA6CQ9H3T2 930 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CENPMQ9NSP4 180 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PRAMEF33A0A0G2JMD5 474 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF726A6NNF4 738 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ENDOUP21128 410 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PMS2P3Q13401 168 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 GPR19Q15760 415 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 GID4Q8IVV7 300 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CHERPQ8IWX8 916 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF385DQ9H6B1 395 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 NANSQ9NR45 359 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SLC7A7Q9UM01 511 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SRPK3Q9UPE1 567 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 BRWD1Q9NSI6 2320 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 OR5K3A6NET4 321 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CBFA2T3O75081 653 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 JRKO75564 520 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 DNAJB5O75953 348 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CD2P06729 351 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 TACSTD2P09758 323 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PRR35P0CG20 571 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CA5AP35218 305 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 DMPKQ09013 629 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PUM1Q14671 1186 aaKnown RBP eCLIP13.63□□□□□ -0.233e-7■■■□□ 18.6
TCOF1-202ENST00000377797 PUS10Q3MIT2 529 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SPRED1Q7Z699 444 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF440Q8IYI8 595 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ARL14Q8N4G2 192 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ADAMTS16Q8TE57 1224 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF304Q9HCX3 659 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CUTCQ9NTM9 273 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PCDHGB5Q9Y5G0 923 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 J3QRK9 145 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 M0R129 80 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CD1EP15812 388 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 KEAP1Q14145 624 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 SPHARQ15513 63 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF385BQ569K4 471 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 RNASE12Q5GAN4 147 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 GTF2IRD2BQ6EKJ0 949 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 FRMPD2BQ6IN97 320 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 C11orf88Q6PI97 169 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 RPTNQ6XPR3 784 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 GTF2IRD2Q86UP8 949 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 PRR22Q8IZ63 422 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 ABHD11Q8NFV4 315 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 OR5L2Q8NGL0 311 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 TAMM41Q96BW9 452 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 COQ8BQ96D53 544 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 CRB3Q9BUF7 120 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 MBD1Q9UIS9 605 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 EXOSC1Q9Y3B2 195 aaKnown RBP13.63□□□□□ -0.23
TCOF1-202ENST00000377797 TRPM7Q96QT4 1865 aa13.63□□□□□ -0.23
TCOF1-202ENST00000377797 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms