RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 RASGEF1AQ8N9B8 481 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 CHDHQ8NE62 594 aaPredicted RBP4.52□□□□□ -1.69
USP48-202ENST00000374730 ZNF555Q8NEP9 628 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 OR13F1Q8NGS4 319 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 SPPL3Q8TCT6 385 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ZNF566Q969W8 418 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 PYCR2Q96C36 320 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 C12orf43Q96C57 262 aaKnown RBP4.52□□□□□ -1.69
USP48-202ENST00000374730 AP2M1Q96CW1 435 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ZDHHC12Q96GR4 267 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 MAGED4Q96JG8 741 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 LINC00615Q96LM1 132 aaPredicted RBP4.52□□□□□ -1.69
USP48-202ENST00000374730 FOPNLQ96NB1 174 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 MUS81Q96NY9 551 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 OR4K3Q96R72 315 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 MBOAT4Q96T53 435 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 PKP4Q99569 1192 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 RAD9AQ99638 391 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 TBCDQ9BTW9 1192 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ATG10Q9H0Y0 220 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ING2Q9H160 280 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 RSPH9Q9H1X1 276 aaPredicted RBP4.52□□□□□ -1.69
USP48-202ENST00000374730 LINC00597Q9H2U6 94 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 EHD1Q9H4M9 534 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 POLR1BQ9H9Y6 1135 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 TM9SF3Q9HD45 589 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ITM2CQ9NQX7 267 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 SLC6A13Q9NSD5 602 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 FAM118AQ9NWS6 357 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 ATXN10Q9UBB4 475 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 GRHPRQ9UBQ7 328 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 DNAJB11Q9UBS4 358 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 STEAP1Q9UHE8 339 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 RPS6KA6Q9UK32 745 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 NAALAD2Q9Y3Q0 740 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 HSPE1-MOB4S4R3N1 261 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 NUMA1Q14980 2115 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 MYO7AQ13402 2215 aa4.52□□□□□ -1.69
USP48-202ENST00000374730 HEATR5BQ9P2D3 2071 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 EDDM13A0A1B0GTR0 161 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 C17orf113A0A1B0GUU1 675 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 LOC100130705A0A1B0GUX0 176 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 A0A1W2PRQ8 180 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 C1orf226A1L170 272 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 A6NCN8 305 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 TMEM202A6NGA9 273 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 OR2AG2A6NM03 316 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 C5orf67F2Z3F1 127 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 H3BMQ9 156 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 RAB27BO00194 218 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 CLIC1O00299 241 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 FOXE1O00358 373 aaPredicted RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 GNGT2O14610 69 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 HS6ST1O60243 411 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 NOL3O60936 208 aaKnown RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 TMCC2O75069 709 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 E2F6O75461 281 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 LRATO95237 230 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 KCNK5O95279 499 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 C1orf105O95561 183 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 SLC16A8O95907 504 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 SOD1P00441 154 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 FABP3P05413 133 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 RB1P06400 928 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 CCDC159P0C7I6 412 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 COX7A2P14406 83 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 EPCAMP16422 314 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 IDSP22304 550 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 CRHBPP24387 322 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 GSTM2P28161 218 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 KDELR2P33947 212 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 RYKP34925 604 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 PCGF2P35227 344 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 PIGAP37287 484 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 RPL3P39023 403 aaKnown RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 BDKRB1P46663 353 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 IST1P53990 364 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 TMBIM6P55061 237 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 TPD52P55327 224 aaPredicted RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 CXCR4P61073 352 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 ISL1P61371 349 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 ST8SIA6P61647 398 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 TBPL1P62380 186 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 VAMP2P63027 116 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 RAE1P78406 368 aaKnown RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 HPCAP84074 193 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 CFHR1Q03591 330 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 SRSF1Q07955 248 aaKnown RBP eCLIP4.51□□□□□ -1.69
USP48-202ENST00000374730 CD47Q08722 323 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 PMS2P3Q13401 168 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 DCTN2Q13561 401 aaKnown RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 NAE1Q13564 534 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 PDE7AQ13946 482 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 KEAP1Q14145 624 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 ACOX1Q15067 660 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 HNRNPA1L2Q32P51 320 aaKnown RBP4.51□□□□□ -1.69
USP48-202ENST00000374730 CCSMST1Q4G0I0 132 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 TMEM52BQ4KMG9 183 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 PAGE2BQ5JRK9 111 aa4.51□□□□□ -1.69
USP48-202ENST00000374730 C6orf141Q5SZD1 244 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms