RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 STMN4Q9H169 189 aaPredicted RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 CES1P1Q9UKY3 287 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GPR55Q9Y2T6 319 aaPredicted RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 RNF11Q9Y3C5 154 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 ROS1P08922 2347 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 TCRBV9S1A1TA0A576 114 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 FAM159BA6NKW6 160 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 KLF4O43474 513 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 TCP1P17987 556 aaKnown RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 TCEA1P23193 301 aaKnown RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 IL12BP29460 328 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 IDUAP35475 653 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 FEN1P39748 380 aaKnown RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 ARL1P40616 181 aaPredicted RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 RPS3AP61247 264 aaKnown RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 GANABQ14697 944 aaKnown RBP12.46□□□□□ -0.41
VPS29-201ENST00000360579 PON3Q15166 354 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 FAM83EQ2M2I3 478 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 RAET1LQ5VY80 246 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 OR5M10Q6IEU7 315 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 C22orf34Q6ZV56 151 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 GOLGA7Q7Z5G4 137 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 CMC1Q7Z7K0 106 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 CTAGE3PQ8IX95 158 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 SLC35F6Q8N357 371 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 FNDC9Q8TBE3 224 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 KLHL29Q96CT2 875 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 ERP27Q96DN0 273 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 TMEM204Q9BSN7 226 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 REG4Q9BYZ8 158 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 TRIM31Q9BZY9 425 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 PPP4R1LQ9P1A2 415 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 EMC9Q9Y3B6 208 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 ZNF780BQ9Y6R6 833 aa12.46□□□□□ -0.41
VPS29-201ENST00000360579 USF3Q68DE3 2245 aa12.46□□□□□ -0.42
VPS29-201ENST00000360579 CD5LO43866 347 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 TSPAN2O60636 221 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 F12P00748 615 aaPredicted RBP12.45□□□□□ -0.42
VPS29-201ENST00000360579 THBDP07204 575 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 GSTA2P09210 222 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 PNLIPRP2P54317 469 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 PRSS12P56730 875 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 GUSBP1Q15486 140 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 EXOC3L2Q2M3D2 409 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 TRMT12Q53H54 448 aaKnown RBP12.45□□□□□ -0.42
VPS29-201ENST00000360579 FRG2Q64ET8 278 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 TTC19Q6DKK2 380 aaPredicted RBP12.45□□□□□ -0.42
VPS29-201ENST00000360579 LARP4Q71RC2 724 aaKnown RBP eCLIP12.45□□□□□ -0.429e-6■■□□□ 12.1
VPS29-201ENST00000360579 METTL4Q8N3J2 472 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 OR6K3Q8NGY3 331 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 ZNF675Q8TD23 568 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 RNF138Q8WVD3 245 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 ATP6V1E2Q96A05 226 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 NXNL1Q96CM4 212 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 PLPPR2Q96GM1 343 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 FRG2BQ96QU4 278 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 FAIM2Q9BWQ8 316 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 MRPL1Q9BYD6 325 aaKnown RBP12.45□□□□□ -0.42
VPS29-201ENST00000360579 OR10A4Q9H209 315 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 PTGES2Q9H7Z7 377 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 SDHAF3Q9NRP4 125 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 LAMP3Q9UQV4 416 aa12.45□□□□□ -0.42
VPS29-201ENST00000360579 A0A087X1B8 175 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 EIF3HO15372 352 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS29-201ENST00000360579 SEC14L5O43304 696 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CT45A8P0DMV1 189 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CT45A9P0DMV2 189 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 PCSK2P16519 638 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 HK1P19367 917 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CCNG1P51959 295 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 GAS1P54826 345 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CLDN15P56746 228 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 IFT88Q13099 833 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 ACAP2Q15057 778 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 ERCC6LQ2NKX8 1250 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CHRFAM7AQ494W8 412 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CT45A2Q5DJT8 189 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 ADAM5Q6NVV9 412 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 KLC3Q6P597 504 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 C3orf62Q6ZUJ4 267 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 COMMD6Q7Z4G1 85 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 METTL25Q8N6Q8 603 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 FADS6Q8N9I5 356 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 MAPK1IP1LQ8NDC0 245 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 AKAP1Q92667 903 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS29-201ENST00000360579 NOL11Q9H8H0 719 aaKnown RBP12.44□□□□□ -0.42
VPS29-201ENST00000360579 SAYSD1Q9NPB0 183 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 YAE1D1Q9NRH1 226 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 PLSCR4Q9NRQ2 329 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 STOML1Q9UBI4 398 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 ZNF337Q9Y3M9 751 aa12.44□□□□□ -0.42
VPS29-201ENST00000360579 CCDC188H7C350 402 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 PLGP00747 810 aaPredicted RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 PLAUP00749 431 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 EVI2BP34910 448 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 SUCLG1P53597 346 aaKnown RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 CTBP2P56545 445 aa12.43□□□□□ -0.42
VPS29-201ENST00000360579 TRA2BP62995 288 aaKnown RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 MRPS35P82673 323 aaKnown RBP12.43□□□□□ -0.42
VPS29-201ENST00000360579 CALCOCO2Q13137 446 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms