RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 KLHDC8AQ8IYD2 350 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 SIMC1Q8NDZ2 872 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 TMEM163Q8TC26 289 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 GANCQ8TET4 914 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 DPEP2Q9H4A9 486 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 B3GAT2Q9NPZ5 323 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 TESQ9UGI8 421 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ENTPD4Q9Y227 616 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 GPSM3Q9Y4H4 160 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 RGS13O14921 159 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MRPL3P09001 348 aaKnown RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 HOXD11P31277 338 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 TAS2R38P59533 333 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 FUT5Q11128 374 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 ASAH1Q13510 395 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 DEFB115Q30KQ5 88 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 C6orf132Q5T0Z8 1188 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 FBXO15Q8NCQ5 510 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MORN4Q8NDC4 146 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 AP3S1Q92572 193 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 ISG20L2Q9H9L3 353 aaKnown RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MCUBQ9NWR8 336 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 TEKT2Q9UIF3 430 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 A0A1W2PR48 441 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 C4orf51C9J302 202 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 REM1O75628 298 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 SLC1A3P43003 542 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 KHKP50053 298 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CSNK1G2P78368 415 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 TGM3Q08188 693 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF658BQ4V348 819 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CCNJQ5T5M9 372 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CPOQ8IVL8 374 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 GDPD1Q8N9F7 314 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 OR5K2Q8NHB8 316 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 BBS10Q8TAM1 723 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CNRIP1Q96F85 164 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF514Q96K75 400 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 PRRC1Q96M27 445 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 ZSCAN32Q9NX65 697 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 NPAP1Q9NZP6 1156 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CXXC1Q9P0U4 656 aaPredicted RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 HSPB11Q9Y547 144 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 TRAV6A0A075B6T7 132 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 SNTNA6NMZ2 147 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 NARSO43776 548 aaKnown RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 UBXN7O94888 489 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 LGI1O95970 557 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 PRKAR1AP10644 381 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MAT2AP31153 395 aaKnown RBP11.39□□□□□ -0.59
CLIP3-201ENST00000360535 SOX9P48436 509 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CDK5Q00535 292 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 COX10Q12887 443 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 BTBD16Q32M84 506 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CCDC58Q4VC31 144 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MTFR2Q6P444 385 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 CLDN22Q8N7P3 220 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 TMEM255BQ8WV15 326 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 SAMD8Q96LT4 415 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 OR51V1Q9H2C8 321 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 RHBGQ9H310 441 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 DEC1Q9P2X7 70 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 MAU2Q9Y6X3 613 aa11.39□□□□□ -0.59
CLIP3-201ENST00000360535 KIAA1671Q9BY89 1806 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 TSPAN11A1L157 253 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 GABRPO00591 440 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 LYRM1O43325 122 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ALPPP05187 535 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ENDOUP21128 410 aaKnown RBP11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF234Q14588 700 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 GPR68Q15743 365 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 C1orf94Q6P1W5 598 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 TIGD4Q8IY51 512 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 DNAJC5GQ8N7S2 189 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 NUP43Q8NFH3 380 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 OR4Q3Q8NH05 313 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 SUSD6Q92537 303 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 WDFY2Q96P53 400 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 SPATA5L1Q9BVQ7 753 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 FAIM2Q9BWQ8 316 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 AICDAQ9GZX7 198 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 EPHX3Q9H6B9 360 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 MBNL1Q9NR56 388 aaKnown RBP11.38□□□□□ -0.59
CLIP3-201ENST00000360535 EXTL2Q9UBQ6 330 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 NPIPA5A0A0B4J1W7 369 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 NPIPA7E9PJI5 369 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ARHGEF9O43307 516 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 NPIPA8P0DM63 369 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ACADMP11310 421 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 PRKCAP17252 672 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 CTNNB1P35222 781 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 BCL6P41182 706 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ARPC4P59998 168 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 RAB40BQ12829 278 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 PLBD1Q6P4A8 553 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ARL9Q6T311 187 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 QSOX2Q6ZRP7 698 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ERN2Q76MJ5 926 aaKnown RBP11.38□□□□□ -0.59
CLIP3-201ENST00000360535 RD3Q7Z3Z2 195 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 ACOT4Q8N9L9 421 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms