RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NNATQ16517 81 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 NADSYN1Q6IA69 706 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 CHRDL2Q6WN34 429 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 LAX1Q8IWV1 398 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 OR5W2Q8NH69 310 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 OVCA2Q8WZ82 227 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 TCEAL3Q969E4 200 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 FEZF1A0PJY2 475 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 AMY2BP19961 511 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 MC2RQ01718 297 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 LMAN2Q12907 356 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CATSPEREQ5SY80 951 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ARL14Q8N4G2 192 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF689Q96CS4 500 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 URM1Q9BTM9 101 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CENPOQ9BU64 300 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 PBDC1Q9BVG4 233 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 OR8D2Q9GZM6 311 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 IL17CQ9P0M4 197 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ARHGAP33O14559 1287 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 AGPAT2O15120 278 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 H2BFMP0C1H6 154 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 DLX5P56178 289 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF91Q05481 1191 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 MLLT11Q13015 90 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 MBTPS1Q14703 1052 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 RAB11BQ15907 218 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 FIGNL1Q6PIW4 674 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC29A4Q7RTT9 530 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 TMEM173Q86WV6 379 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ESX1Q8N693 406 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CD99L2Q8TCZ2 262 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF583Q96ND8 569 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 SMG9Q9H0W8 520 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 PLCH1Q4KWH8 1693 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 EDDM13A0A1B0GTR0 161 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CAMLGP49069 296 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 NKPD1Q17RQ9 610 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 LRRC26Q2I0M4 334 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 MEX3DQ86XN8 651 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 SORCS1Q8WY21 1168 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 FBXO45P0C2W1 286 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 HOXA11P31270 313 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 DPP6P42658 865 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 GPR143P51810 404 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CAV3P56539 151 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 WDR5P61964 334 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CRHR2Q13324 411 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 FGL2Q14314 439 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 TP53I3Q53FA7 332 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 LYSMD2Q8IV50 215 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 OR5D16Q8NGK9 328 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 CIDECQ96AQ7 238 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 RETREG1Q9H6L5 497 aa18.51■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A1W2PQ45 241 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A1W2PQY0 241 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 S100PP25815 95 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 RAB41Q5JT25 222 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 RAB11FIP2Q7L804 512 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 NPLOC4Q8TAT6 608 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 SETD7Q8WTS6 366 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 TSPAN15O95858 294 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ERCC1P07992 297 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF35P13682 527 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 GNRHRP30968 328 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 PRKCZQ05513 592 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ADPRMQ3LIE5 342 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ACSM3Q53FZ2 586 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 GRHL2Q6ISB3 625 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 LRRC25Q8N386 305 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC41A3Q96GZ6 507 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 OR2M2Q96R28 347 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 IL26Q9NPH9 171 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 SLCO3A1Q9UIG8 710 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ACSL5Q9ULC5 683 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC45A1Q9Y2W3 748 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 ACTL7AQ9Y615 435 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 OR8U9P0C7N5 309 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 PBX2P40425 430 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 BLKP51451 505 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 OR5M3Q8NGP4 307 aa18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 COL16A1Q07092 1604 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 COL2A1P02458 1487 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-202ENST00000356786 FRS3O43559 492 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 RAB3DO95716 219 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 PTHP01270 115 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 MT-ND4P03905 459 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 TAZQ16635 292 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF283Q8N7M2 679 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 SCGB1C1Q8TD33 95 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 TXNDC15Q96J42 360 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ANKRD34BA5PLL1 514 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 TRAPPC13A5PLN9 417 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 HCRTR2O43614 444 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 STC2O76061 302 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 NR2C1P13056 603 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 DLSTP36957 453 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF805Q5CZA5 627 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 FAM69AQ5T7M9 428 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms