RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC30A1Q9Y6M5 507 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FEZF1A0PJY2 475 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PABPN1LA6NDY0 278 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 B8ZZF3 427 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 M0QYG6 137 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 NOBOXO60393 691 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SYNCRIPO60506 623 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 SEMA3DO95025 777 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 AGFG2O95081 481 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GABARAPO95166 117 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TRIM16O95361 564 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PGM3O95394 542 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ONECUT2O95948 504 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MT-ND5P03915 603 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PRPS2P11908 318 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 F3P13726 295 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ETFAP13804 333 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ITIH1P19827 911 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TNFRSF1BP20333 461 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ITGALP20701 1170 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PRKACGP22612 351 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ANOS1P23352 680 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GSTM2P28161 218 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 HTR2AP28223 471 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ACSL1P33121 698 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 KDELR2P33947 212 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 KRT20P35900 424 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CAPGP40121 348 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MNAT1P51948 309 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 EMX1Q04741 257 aaPredicted RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 CHIT1Q13231 466 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RIN1Q13671 783 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FZD2Q14332 565 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 VEPH1Q14D04 833 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RPE65Q16518 533 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 POM121L1PQ3SYA9 428 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ZNF684Q5T5D7 378 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DEPDC1Q5TB30 811 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 KLC3Q6P597 504 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 LAYNQ6UX15 382 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ANKRD46Q86W74 232 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CPOQ8IVL8 374 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 APLFQ8IW19 511 aaPredicted RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 LGI4Q8N135 537 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OR2L13Q8N349 312 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SLC44A3Q8N4M1 653 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 C1orf52Q8N6N3 182 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 ZNF441Q8N8Z8 693 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OR2L3Q8NG85 312 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OR5M3Q8NGP4 307 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RHOXF1Q8NHV9 184 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 METTL6Q8TCB7 284 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SLC38A5Q8WUX1 472 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ZNRF4Q8WWF5 429 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RSC1A1Q92681 617 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RAB7BQ96AH8 199 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MTERF3Q96E29 417 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 WWC2-AS2Q96NR7 200 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RDH12Q96NR8 316 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GUCD1Q96NT3 240 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FCRL4Q96PJ5 515 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MTERF1Q99551 399 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 BARHL1Q9BZE3 327 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FAM192AQ9GZU8 254 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CHRNA10Q9GZZ6 450 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 C11orf54Q9H0W9 315 aaPredicted RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 LIN28AQ9H9Z2 209 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 BCL2L10Q9HD36 194 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DNAJC11Q9NVH1 559 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FAM120CQ9NX05 1096 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 PKD2L2Q9NZM6 624 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TXNDC16Q9P2K2 825 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OPTCQ9UBM4 332 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SLC25A13Q9UJS0 675 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ADAM29Q9UKF5 820 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ANGPTL2Q9UKU9 493 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ICAM5Q9UMF0 924 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SUFUQ9UMX1 484 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 RNF6Q9Y252 685 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CA5BQ9Y2D0 317 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ATG4BQ9Y4P1 393 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SPTBP11277 2137 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TRRAPQ9Y4A5 3859 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 IGKV3D-11A0A0A0MRZ8 115 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 PRR32B1ATL7 298 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 PYCARD-AS1I3L0S3 204 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 SLC1A7O00341 560 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 PCDH17O14917 1159 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 LRRTM2O43300 516 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 UGT2B11O75310 529 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 SERPINA1P01009 418 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 GBAP04062 536 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 PROS1P07225 676 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ETS2P15036 469 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 IL7RP16871 459 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ENGP17813 658 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 POLR2EP19388 210 aaKnown RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 PRPS1L1P21108 318 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ELAVL4P26378 380 aaKnown RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 CD79BP40259 229 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms