RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 NDUFA9Q16795 377 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 C12orf73Q69YU5 71 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 KLHL36Q8N4N3 616 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 BBS10Q8TAM1 723 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 WFIKKN2Q8TEU8 576 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 CREB3L4Q8TEY5 395 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 SMAP2Q8WU79 429 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 SPRYD4Q8WW59 207 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 RSPO3Q9BXY4 272 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 CDH23Q9H251 3354 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 BEX1Q9HBH7 125 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TBX21Q9UL17 535 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 PCDHGB2Q9Y5G2 931 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TRAV6A0A075B6T7 132 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 OTOL1A6NHN0 477 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 HRO43593 1189 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 AKAP8O43823 692 aaKnown RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 UBXN7O94888 489 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 NFATC1O95644 943 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 AIFM1O95831 613 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 GKN3PP0CG01 181 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TRIM23P36406 574 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 STXBP1P61764 594 aaKnown RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 XKRXQ6PP77 449 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TMEFF1Q8IYR6 380 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 CADM2Q8N3J6 435 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 LINC01555Q8NAE3 123 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 SEMA4GQ9NTN9 838 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 EXTL2Q9UBQ6 330 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 GPR34Q9UPC5 381 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 HSPB11Q9Y547 144 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 A0A1W2PR48 441 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 LILRB3O75022 631 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 IL1AP01583 271 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 ACADMP11310 421 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 DDX6P26196 483 aaKnown RBP eCLIP12.11□□□□□ -0.472e-36■■■□□ 18.4
HMGCS1-201ENST00000325110 PXNP49023 591 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 GPR50Q13585 617 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 MTFR2Q6P444 385 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TIGD4Q8IY51 512 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 CYB561A3Q8NBI2 242 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 OR8D4Q8NGM9 314 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 LILRB4Q8NHJ6 448 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 TMEM163Q8TC26 289 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 GRHL3Q8TE85 626 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 RFKQ969G6 155 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 CNRIP1Q96F85 164 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 ZFP3Q96NJ6 502 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 PCBD2Q9H0N5 130 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 MIXL1Q9H2W2 232 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 IGFLR1Q9H665 355 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 PHPT1Q9NRX4 125 aaPredicted RBP12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 NKIRAS2Q9NYR9 191 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 DPP7Q9UHL4 492 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 ZNF222Q9UK12 451 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 ICKQ9UPZ9 632 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 WDR45Q9Y484 360 aa12.11□□□□□ -0.47
HMGCS1-201ENST00000325110 C17orf113A0A1B0GUU1 675 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 A0A1W2PRQ8 180 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 FAM172BPA6NC97 362 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 LRRC72A6NJI9 287 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 POLR1CO15160 346 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ACP2P11117 423 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 BCL6P41182 706 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SLC1A3P43003 542 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TEKQ02763 1124 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 DEFB134Q4QY38 66 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ANKRD33Q7Z3H0 272 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 YAF2Q8IY57 180 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 LRRC56Q8IYG6 542 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 KCT2Q8NC54 265 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 FBXO15Q8NCQ5 510 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 OR52L1Q8NGH7 329 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 OR51A7Q8NH64 312 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SETD6Q8TBK2 473 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 CAMK1GQ96NX5 476 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 OR7D2Q96RA2 312 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 DPH1Q9BZG8 443 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 EPHX3Q9H6B9 360 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3DA0A087WVF3 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3IA0A087WXS9 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3EA0A087X179 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3KA0A087X1G2 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3FA6NER0 549 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 C12orf71A8MTZ7 269 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 A8MVJ9 347 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 B4DXG7 233 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3LB9A6J9 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SPINT1O43278 529 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBX6O95947 436 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 HLA-DPB1P04440 258 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3HP0C7X1 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ZNF24P17028 368 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 HIST1H1TP22492 207 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ACVR1BP36896 505 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ETV6P41212 452 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 RAB28P51157 221 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 PLK5Q496M5 336 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 C2orf27AQ580R0 203 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3GQ6DHY5 549 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms