RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR51A7Q8NH64 312 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SAMD11Q96NU1 681 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 PRAP1Q96NZ9 151 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TBL1XR1Q9BZK7 514 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SLC6A16Q9GZN6 736 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TNRC6CQ9HCJ0 1690 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 OR6C2Q9NZP2 312 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TMEM14AQ9Y6G1 99 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 WASH4PA8MWX3 477 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 OIP5O43482 229 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 MMP12P39900 470 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 AQP2P41181 271 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SLC6A9P48067 706 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 MASP1P48740 699 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SELENOWP63302 87 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 DHCR24Q15392 516 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 CHRFAM7AQ494W8 412 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 NHSL2Q5HYW2 709 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SHFQ7M4L6 423 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 KCTD20Q7Z5Y7 419 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 CELF2-AS1Q8N7Q2 184 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 WDSUB1Q8N9V3 476 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SLC5A7Q9GZV3 580 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 HEBP1Q9NRV9 189 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SPO11Q9Y5K1 396 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GPR89AB7ZAQ6 455 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GPR89BP0CG08 455 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 CTSAP10619 480 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 MAOAP21397 527 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 LSSP48449 732 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SPINT3P49223 89 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 MRPS10P82664 201 aaKnown RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 FAPQ12884 760 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 AMZ1Q400G9 498 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 C6orf120Q7Z4R8 191 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ARHGAP12Q8IWW6 846 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 DNAJC5GQ8N7S2 189 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SORCS1Q8WY21 1168 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 C3orf49Q96BT1 292 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ZNF300Q96RE9 604 aaPredicted RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 SSX3Q99909 188 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 BOLA1Q9Y3E2 137 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 USP3Q9Y6I4 520 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 POLR1CO15160 346 aaPredicted RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 VEGFDO43915 354 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GABARAPO95166 117 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 UBBP0CG47 229 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 UBCP0CG48 685 aaKnown RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 PRSS56P0CW18 603 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ENDOUP21128 410 aaKnown RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 OXA1LQ15070 435 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ZNF789Q5FWF6 425 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 METAP1DQ6UB28 335 aaPredicted RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 COMTD1Q86VU5 262 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 FAM83FQ8NEG4 500 aaPredicted RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 CNN2Q99439 309 aaKnown RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 POLDIP3Q9BY77 421 aaKnown RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 THSD1Q9NS62 852 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 DHDHQ9UQ10 334 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 HIF3AQ9Y2N7 669 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ATP6V1G2-DDX39BF2Z307 99 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 HPGDSO60760 199 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 IFNA5P01569 189 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 JUNBP17275 347 aaPredicted RBP10.91□□□□□ -0.66
VPS39-201ENST00000318006 AKR1C4P17516 323 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GIFP27352 417 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GABRB3P28472 473 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 RAP2BP61225 183 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 DYRK1AQ13627 763 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 ZNF674Q2M3X9 581 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 TRNP1Q6NT89 227 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 CFAP77Q6ZQR2 320 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 TMEM25Q86YD3 366 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 LYSMD2Q8IV50 215 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 IQCF1Q8N6M8 205 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SLC7A13Q8TCU3 470 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 C17orf62Q9BQA9 187 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 OCEL1Q9H607 264 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SFXN1Q9H9B4 322 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 FANCFQ9NPI8 374 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GPR52Q9Y2T5 361 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 GPR45Q9Y5Y3 372 aa10.91□□□□□ -0.66
VPS39-201ENST00000318006 SLX4Q8IY92 1834 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ZNF726A6NNF4 738 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ERCC1P07992 297 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 AK4P27144 223 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 SSX2Q16385 188 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 PCGF3Q3KNV8 242 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 CPZQ66K79 652 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ARHGAP11AQ6P4F7 1023 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ALKAL1Q6UXT8 129 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 PXKQ7Z7A4 578 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 NRSN1Q8IZ57 195 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 GGHQ92820 318 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 SMARCD2Q92925 531 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 MAL2Q969L2 176 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 DPYSL5Q9BPU6 564 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 PRRG4Q9BZD6 226 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 C20orf27Q9GZN8 174 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ANHXE9PGG2 379 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms